Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0571 ATGGCTTTCCACTTTCCTCGTCCGAGCTTTGTCGTCGTCGTCGCCTTCTTCATTTCGTTTATGACGCCAGGGATGACCACTAGACCGGTGCTCGCCATCTTTCGAGCAAGCCCTTGGCAGCTTGCCCATGCCACCTTCTATGGCGATGAGACAGCATCTGAAACAATGGGAGGAGCGTGTGGATATGGAAACTTGTTCACGAATGGCTATGGTGTCGACACGGTGGCTCTAAGCTCTACACTCTTTAACAACGGCTACGCTTGCGGAACTTGCTTTCAAATCAAATGCATTCAATCCAAAGCTTGCTACGCTAACGTTGCTTTCACTACGGTGACGGCGACCAATCTTTGCCCGCCGAATTGGGCCAAACCGTCAAACAACGGCGGCTGGTGCAACCCTCCGAGGGTTCACTTCGACATGTCGAAACCGGCCTTTATGAAGATCGCTAACTGGAAGGCCGGGATCGTCCCCGTCGTGTACCGACGAGTGGCATGTGGCAAAAGGGATGGCCTTCGGTTCACATTCCAGGGAAATGGGTACTGGCTTTTGGTGTATGTGATGAATGTTGGAGGTGGAGGGGATGTGTCGGGAATGTGGGTGAAAGGAAGCAAGACAGGGTGGATCAAGATGAGCCATAATTGGGGAGCTTCCTATCAAGCATTTTCAACTTTGGTTGGCCAATCTCTCTCCTTTAGAGTCACTTCCTACACAACAAAAGAGACCATCACGGCTTGGAATGTTGCTCCTTCTAATTGGAGGTTTGGCGTCACCTACAAAGCCAACCTCAACTTTCGTTGA 798 51.0 MAFHFPRPSFVVVVAFFISFMTPGMTTRPVLAIFRASPWQLAHATFYGDETASETMGGACGYGNLFTNGYGVDTVALSSTLFNNGYACGTCFQIKCIQSKACYANVAFTTVTATNLCPPNWAKPSNNGGWCNPPRVHFDMSKPAFMKIANWKAGIVPVVYRRVACGKRDGLRFTFQGNGYWLLVYVMNVGGGGDVSGMWVKGSKTGWIKMSHNWGASYQAFSTLVGQSLSFRVTSYTTKETITAWNVAPSNWRFGVTYKANLNFR 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6438462 6439501 - Lag0017655.1 Lac5g0571 607213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0571 265 PRINTS Expansin signature 181 202 IPR002963 GO:0009664(InterPro)
Lac5g0571 265 PRINTS Expansin signature 128 145 IPR002963 GO:0009664(InterPro)
Lac5g0571 265 PRINTS Expansin signature 169 181 IPR002963 GO:0009664(InterPro)
Lac5g0571 265 PRINTS Expansin signature 246 262 IPR002963 GO:0009664(InterPro)
Lac5g0571 265 PRINTS Expansin signature 69 83 IPR002963 GO:0009664(InterPro)
Lac5g0571 265 PRINTS Expansin signature 145 158 IPR002963 GO:0009664(InterPro)
Lac5g0571 265 PRINTS Expansin signature 109 119 IPR002963 GO:0009664(InterPro)
Lac5g0571 265 Gene3D - 25 165 IPR036908 -
Lac5g0571 265 SMART dpbb_1 74 160 IPR007112 -
Lac5g0571 265 SUPERFAMILY PHL pollen allergen 170 259 IPR036749 -
Lac5g0571 265 CDD DPBB_EXPA_N 38 165 - -
Lac5g0571 265 Gene3D - 170 265 IPR036749 -
Lac5g0571 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 170 IPR007112 -
Lac5g0571 265 Pfam Expansin C-terminal domain 172 249 IPR007117 -
Lac5g0571 265 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576(InterPro)
Lac5g0571 265 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576(InterPro)
Lac5g0571 265 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576(InterPro)
Lac5g0571 265 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576(InterPro)
Lac5g0571 265 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576(InterPro)
Lac5g0571 265 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576(InterPro)
Lac5g0571 265 SUPERFAMILY Barwin-like endoglucanases 31 188 IPR036908 -
Lac5g0571 265 Pfam Lytic transglycolase 74 160 IPR009009 -
Lac5g0571 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 260 IPR007117 -
Lac5g0571 265 PANTHER EXPANSIN-A15 23 260 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2161 Lac-Chr11:37673880 Lac5g0571 Lac-Chr5:6438462 2.00E-122 dispersed
Lac5g0571 Lac-Chr5:6438462 Lac7g2733 Lac-Chr7:46407114 1.00E-76 dispersed
Lac5g0571 Lac-Chr5:6438462 Lac1g2050 Lac-Chr1:42040877 2.80E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0571 - - - 0.0