Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0583 ATGGCTGGTCGCATTTTGGAAACTTTGTCATTTGGTGGGTCGCAACATGGTCAAGGTAATCAATCTTGGCCATTTTCGTCTGCAAATGCATCATTGAAGATTTTGCTCTTGCATGGTTATTTGGACATTTGGGTCAAGGGAGCCAAGAACCTTCCCAATATGGACATGTTTCATAAGACTCTTGGGGATGTGTTTTCAAAAGTGTCTTTTAAGAGTTCCAGAAACAGTGATGGGGAAAAGCCTTCAAAAGTGACTAGTGACCCATATGTGACGATTTCTGTATCAAATGCTGTGATTGGAAGAACTTTTGTGATTGATAATGATGAAAATCCTGTTTGGATGCAACATTTTAATGTTCCTGTAGCTCACTATGGTGCTGAAGTGCACTTTGTTGTCAAAGACCATGATGTTGTGGGATCACAAATCATGGGTGTTGTTGCAATTCCTGTGGAGCAATTATACTCTGGAGCCATAGTTGAGGGAACCTATCCAATCCTAAATAGTAGTAGGAAGCCCTGCAAGCCTGGGGCAGTCTTGAGTTTGTCGATTCAGTATATTCCGGCAGACCGGGCAGCCATTTTTAGCGGTGGAATGTATGCATCTCTTGATCACCAGGGAGTTTCAGACACATATTTTCCTCTTAGGAAAGGGGGAAAAGTTACATTGTACCAAGATGCCCATGTTGAGGAGGGATGTCTTCCAACAGATTTTAAGCTTCATGGTGGGGTTCAATATGAACATAGGGGCTGTTGGGACGACATCTCTGAATCAATTAGTCATGCTCGCCGTTTAATCTATATTACAGGCTGGTCTGTATACCACAGTGTTAAACTAGTTAGAGATGGAAAGGCTAAAGAATGCATATTGGGGGACCTTCTCAAAGCCAAGTCTCAAGAAGGAGTAAGAGTGTTGCTTCTTATATGGGACGATCCAACTTCAAGAAGTATGTTGGGATATAAAACGGTTGGGATGATGAATACAAATGATGAGGAAACCCGTCGGTTTTTTAAGAACTCTTCAGTCCAAGTGATTTTGTGCCCACGATCTGGTGGAAAAGGTCATAGTTGGATTAAGAAACAGGAAGCCGGAACCATCTATACCCACCATCAGAAGACAGTTATTGTAGATGCTGATGCTGGCAACCACAAAAGAAAAATTGTAGCTTTTGTTGGAGGTCTCGATTTATGTTTGGGCCGATATGATACTTCGAGACATCCTCTTTTCCGGACATTGCAAACTACACACGTGGATGACTACCATAACCCCAATTTAACGGGACCGACTGATTGGTGTCCAAGAGAACCATGGCATGATTTGCACTCTAAGATTGATGGTCCAGCGGCGTACGATGTCCTTGCAAATTTTGAGGAGCGTTGGTTGAGAGCTTCGGAGCCTCATGGGCTTAGAAAGCTAAAAAAGTTACATGAAGATGTGTTGCTCAAAATTGAAAGAATTCCTGAAATTATGGGAATTGCTGATGCTTCTCGACTGTGTAATAATGATCCAGAAGGTTGGAACGTCCAGATTTTCCGTTCAATCGATTCCAATTCTGTGAAAGGATTTCCTGATGAGCCAAAAGATGCCATCAAGAGGAACTTAGTATGTGGAAAGAATGTGATGATAGACATGAGTATACATTCAGCATATGTTAATGCTATTCGTGCTGCCCAACGCTTCATTTATATTGAAAACCAATACTTCCTTGGATCATCTTATAATTGGAGTGCTCACAAAGACTTGGGGGCTAATAACTTAATACCAATGGAAATTGCCCTTAAAATTGTGGAGAAAATCAAAGCTAAAGAAAGGTTTTCGGCATATGTGGTTATCCCAATGTGGCCGGAAGGTGTTCCTACAAGCACTCCTATTCAAAGAATTCTTTTCTGGCAGAGTAGGACAATGCAAATGATGTATGAAATGATATATAATGCTTTAGAGGAGGTTGGACTTCATAAAACATATGAGCCTCAAGACTACTTGAATTTCTTCTGCCTCGGAAACCGTGAGATGCTCGATAGAAATGGAGTTGAAGCCGGGAACGGAGAAAAGAATGCTCAATCACTTGTTCGTAAGAGTCGACGCTTTATGATCTATGTTCATTCTAAAGGAATGATAGTAGATGATGAGTATGTCATATTGGGATCTGCAAATATCAATCAAAGGTCGCTTGAAGGTACTAGAGACACTGAAATAGCAATGGGTGCATATCAACCTCGTCATACATGGTCAAGTAAACGCTCAAGCCCACGTGGTCAGGTGTATGGATATAGAATGTCATTATGGGCAGAGCACACAGGAACAATGGAGGAATGTTTCGAGAGACCAGAGAGTATTGAATGTGTAAGACGAATCAGATCATTGGGTGAGAGAAACTGGAGACAATACGTAGCTGAGGAAGTGACTGAAATGAGAAGTCATCTTCTTAAATATCCATTGCAAGTTGATCCAACTGGTAAGGTAACCCATCTTCCTGGTTGTGAAAGCTTCCCAGACCTTGGTGGCAACATATTGGGAACATTCATTGCCATCCAAGAGAACCTTACAATTTGA 2550 41.53 MAGRILETLSFGGSQHGQGNQSWPFSSANASLKILLLHGYLDIWVKGAKNLPNMDMFHKTLGDVFSKVSFKSSRNSDGEKPSKVTSDPYVTISVSNAVIGRTFVIDNDENPVWMQHFNVPVAHYGAEVHFVVKDHDVVGSQIMGVVAIPVEQLYSGAIVEGTYPILNSSRKPCKPGAVLSLSIQYIPADRAAIFSGGMYASLDHQGVSDTYFPLRKGGKVTLYQDAHVEEGCLPTDFKLHGGVQYEHRGCWDDISESISHARRLIYITGWSVYHSVKLVRDGKAKECILGDLLKAKSQEGVRVLLLIWDDPTSRSMLGYKTVGMMNTNDEETRRFFKNSSVQVILCPRSGGKGHSWIKKQEAGTIYTHHQKTVIVDADAGNHKRKIVAFVGGLDLCLGRYDTSRHPLFRTLQTTHVDDYHNPNLTGPTDWCPREPWHDLHSKIDGPAAYDVLANFEERWLRASEPHGLRKLKKLHEDVLLKIERIPEIMGIADASRLCNNDPEGWNVQIFRSIDSNSVKGFPDEPKDAIKRNLVCGKNVMIDMSIHSAYVNAIRAAQRFIYIENQYFLGSSYNWSAHKDLGANNLIPMEIALKIVEKIKAKERFSAYVVIPMWPEGVPTSTPIQRILFWQSRTMQMMYEMIYNALEEVGLHKTYEPQDYLNFFCLGNREMLDRNGVEAGNGEKNAQSLVRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSLEGTRDTEIAMGAYQPRHTWSSKRSSPRGQVYGYRMSLWAEHTGTMEECFERPESIECVRRIRSLGERNWRQYVAEEVTEMRSHLLKYPLQVDPTGKVTHLPGCESFPDLGGNILGTFIAIQENLTI 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6529221 6536113 + Lag0017667.1 Lac5g0583 607225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0583 849 FunFam Phospholipase D 512 741 - -
Lac5g0583 849 Pfam Phospholipase D C terminal 769 839 IPR024632 -
Lac5g0583 849 Gene3D Endonuclease Chain A 509 747 - -
Lac5g0583 849 FunFam Phospholipase D delta 241 478 - -
Lac5g0583 849 SMART C2_3c 40 162 IPR000008 -
Lac5g0583 849 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 37 187 IPR035892 -
Lac5g0583 849 ProSiteProfiles C2 domain profile. 22 163 IPR000008 -
Lac5g0583 849 Pfam C2 domain 39 164 IPR000008 -
Lac5g0583 849 CDD C2_plant_PLD 35 186 - -
Lac5g0583 849 PIRSF PLD_plant 26 849 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Lac5g0583 849 Gene3D C2 domain 34 172 IPR035892 -
Lac5g0583 849 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 364 399 IPR001736 GO:0003824(InterPro)
Lac5g0583 849 Pfam Phospholipase D Active site motif 366 396 IPR001736 GO:0003824(InterPro)
Lac5g0583 849 Pfam Phospholipase D Active site motif 697 722 IPR001736 GO:0003824(InterPro)
Lac5g0583 849 SUPERFAMILY Phospholipase D/nuclease 545 781 - -
Lac5g0583 849 SMART pld_4 364 399 IPR001736 GO:0003824(InterPro)
Lac5g0583 849 SMART pld_4 695 722 IPR001736 GO:0003824(InterPro)
Lac5g0583 849 Gene3D Endonuclease Chain A 239 478 - -
Lac5g0583 849 PANTHER PHOSPHOLIPASE D 36 837 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lac5g0583 849 SUPERFAMILY Phospholipase D/nuclease 206 463 - -
Lac5g0583 849 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 695 722 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0678 Lac-Chr11:7033408 Lac5g0583 Lac-Chr5:6529221 3.60E-194 dispersed
Lac12g1850 Lac-Chr12:34910714 Lac5g0583 Lac-Chr5:6529221 0.00E+00 dispersed
Lac1g3046 Lac-Chr1:51104677 Lac5g0583 Lac-Chr5:6529221 2.00E-243 dispersed
Lac5g0583 Lac-Chr5:6529221 Lac6g0638 Lac-Chr6:5414661 4.10E-196 dispersed
Lac5g0583 Lac-Chr5:6529221 Lac5g0585 Lac-Chr5:6561539 1.30E-98 proximal
Lac5g0583 Lac-Chr5:6529221 Lac5g0587 Lac-Chr5:6605874 7.40E-73 proximal
Lac5g0583 Lac-Chr5:6529221 Lac5g0584 Lac-Chr5:6542642 5.10E-138 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0583 K01115 - csv:101208016 1630.54