Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0584 ATGGCTGGTCACCTTTACGAAACCCTGTCATTTGATGGGTCGAAGCATGGTCAAGGTCATCAATCTTTTCCATTTTCCTCTGCCAATGAGTCGTTGAGGGTTTTGCTTTTGCATGGCTATTTAGACATTTGGGTCAAGGAAGCCAAAAACCTTCCCAATATGGACTTGTTCCGTAAGAAACTTTTAGGTAAATTGTCAAAAGTTTCCTCAAGGGCTTTCAAAAAAGTCGCCGAAGGAATGACCAGTGATCCGTACGTGACGATATCTGTATCGGGTGTTGTGATTGGAAGAACTTTCGTCATTGATAATAATGAGAATCCTGTTTGGATGCAACAATTTTATGTTCCTGTGGCTCATTATGGTGCAGAAGTGCTGTTTGTTGTGAAGGACCATGATGCTGTGGGATCAGAAACCATCGGTACTGTTGCAATCCCAGTGGAGCAATTATGTTCAGGTTCCAAGGTTGAGGGAGCCTTTCCAATCCTAGATAGTAGTAGGCAGCCTTGCAAGCCTGGGGCAGTTTTGAGTTTGTCGATTCGGTATACTCCGGTCGACCGAACGACGATTTTCGACGGCGGAATGTATGCATCTCCTGATTACCAGGGAGTTTCTGGCACATATTTTCCTCTTAGAAAAGGGGGGAAAGTTACGCTCTACCAAGACGCCCATGTCGAGGGACATGGGTGTCTTCCAACAGATTTTAGGCTTCATGGTGGGCTTGAATATCAACACAGGAGTTGTTGGGGCGACATCTCTGAAGCAATTAGCCATGCTCGTCATTTAATCTATATTACAGGTTGGTCTGTGTACCATGAAGTTAGACTTGTTCGAGATGGCAGTAAGGCCGGAGAATGCATGCTAGGAGACCTTCTCAAAGCCAAGTCTCAGGAAGGAGTAAGAGTATTGCTTCTTGTATGGGACGATCCAACATCACATAGGATTTTGGGATATACAAAGGTATGTACGTACCTACAAAACACATATGATATTCATATATTGTTGCAGCTCTTCTTTATAGCTTTCACTGGTTATTGTCTTAATAGAATCAATGGTAAAATACATTTTTGGTCCGGTTTCAAAATCGGACAATCAAGTCCCTACTATTCCGGAAATGTATCTATTGAGTCCCTCTAG 1134 43.21 MAGHLYETLSFDGSKHGQGHQSFPFSSANESLRVLLLHGYLDIWVKEAKNLPNMDLFRKKLLGKLSKVSSRAFKKVAEGMTSDPYVTISVSGVVIGRTFVIDNNENPVWMQQFYVPVAHYGAEVLFVVKDHDAVGSETIGTVAIPVEQLCSGSKVEGAFPILDSSRQPCKPGAVLSLSIRYTPVDRTTIFDGGMYASPDYQGVSGTYFPLRKGGKVTLYQDAHVEGHGCLPTDFRLHGGLEYQHRSCWGDISEAISHARHLIYITGWSVYHEVRLVRDGSKAGECMLGDLLKAKSQEGVRVLLLVWDDPTSHRILGYTKVCTYLQNTYDIHILLQLFFIAFTGYCLNRINGKIHFWSGFKIGQSSPYYSGNVSIESL 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6542642 6543775 + Lag0017668.1 Lac5g0584 607226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0584 377 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 37 184 IPR035892 -
Lac5g0584 377 PANTHER PHOSPHOLIPASE D 36 321 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lac5g0584 377 CDD C2_plant_PLD 34 182 - -
Lac5g0584 377 Gene3D C2 domain 34 170 IPR035892 -
Lac5g0584 377 ProSiteProfiles C2 domain profile. 20 159 IPR000008 -
Lac5g0584 377 SMART C2_3c 40 158 IPR000008 -
Lac5g0584 377 Pfam C2 domain 39 160 IPR000008 -
Lac5g0584 377 SUPERFAMILY Phospholipase D/nuclease 200 314 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0584 Lac-Chr5:6542642 Lac6g0541 Lac-Chr6:4491594 1.10E-63 dispersed
Lac5g0583 Lac-Chr5:6529221 Lac5g0584 Lac-Chr5:6542642 5.10E-138 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0584 K01115 - csv:101208016 485.723