Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0587 ATGCTCCTTATCTCAAAACTCAGGGGAGCTAATAACTTAGTACCAATGGAAATTGCTCTTAAAATTGTGAACAAGATCAAAGCTAATGAAAGATTTTCAGCCTACATACTTATCCCAATGTGGCCAGAAGGTGTTCCTACAAGCGTGTTTATGCAAAGAATTCTTCTGTGGCAGAGTATGACAATAGAAATGATGTACAAAATGATATACAAAGCTTTGGAGGAGGTTGGCCTTCATGAAAAATATGAACCTGAAGACTACCTCAACTTTTTTTGCCTGGGAAATCGTGAGGTATTCGATGTCAAAGACGATGTTCAAGCCGAGGATTCCTATGGAGGAAGGACTCCTCAAGCACTGGTTCGTAAGAATCGACGCTTTATGATCTATGTTCATTCTAAAGGAATGATAGTAGATGATGAGTATGTTATATTGGGATCGGCAAATATCAATCAACGATCGCTTGCAGGTACTAGAGACACCGAAATAGCAATGGGTGCATATCAGCCTTGCCATACATGGTCACCAAACAAATGTTCAAGCCCACGCGGTCAGGAATCATAA 561 40.29 MLLISKLRGANNLVPMEIALKIVNKIKANERFSAYILIPMWPEGVPTSVFMQRILLWQSMTIEMMYKMIYKALEEVGLHEKYEPEDYLNFFCLGNREVFDVKDDVQAEDSYGGRTPQALVRKNRRFMIYVHSKGMIVDDEYVILGSANINQRSLAGTRDTEIAMGAYQPCHTWSPNKCSSPRGQES 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6605874 6607599 + Lag0017671.1 Lac5g0587 607229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0587 186 Pfam Phospholipase D Active site motif 128 153 IPR001736 GO:0003824(InterPro)
Lac5g0587 186 SMART pld_4 126 153 IPR001736 GO:0003824(InterPro)
Lac5g0587 186 Gene3D Endonuclease Chain A 2 170 - -
Lac5g0587 186 PANTHER PHOSPHOLIPASE D 8 172 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lac5g0587 186 SUPERFAMILY Phospholipase D/nuclease 17 162 - -
Lac5g0587 186 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 126 153 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0587 Lac-Chr5:6605874 Lac6g0544 Lac-Chr6:4523124 1.70E-54 dispersed
Lac5g0583 Lac-Chr5:6529221 Lac5g0587 Lac-Chr5:6605874 7.40E-73 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0587 K01115 - csv:101208016 280.796