Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0598 ATGGCGTCTTCTTCTTCAGGCAGCAGCAGCAGCAACAGCTATGACATGCCATGGGTGGAGAAGTATAGGCCCATCAAGGTCGCTGACATTGTGGGCAATGAAGATGCAGTTTCTCGGCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGGTCCGCCAGGAACTGGGAAGACAACCAGTATTTTGGCTCTTGCTCACGAGCTCTTGGGACCGAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGACGTTGTGAGGAACAAAATCAAGATGTTTGCCCAAAAGAAAGTAACATTACCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCAAACACTACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATCGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGTCGCCTCATGGTGGTGCTCCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACCGCTGATGGTGATATGAGGCAGGCGTTGAATAATCTGCAAGCTACATATAGTGGATTCCGCTTTGTAAACCAAGACAATGTTTTCAAGGTTTGCGATCAACCTCATCCGCTGCATGTGAAGAATGTGGTGCGCAATGTGCTTGGAGGTAAATTTGATGATGCTTGTGCAGGTTTGAAGCAACTTTATGACTTGGGCTATTCTCCCACCGACATAATAACCACTCTTTTCAGAATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATCTGTGATGGAGTTGGTTCTTACCTTCAGCTATGCGGTCTTTTGGCCAAGCTTTCCATGGTTCGTGAGACTGCCAAAGCACCATGA 1005 44.78 MASSSSGSSSSNSYDMPWVEKYRPIKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLGGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6758796 6764596 - Lag0017682.1 Lac5g0598 607240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0598 334 Gene3D - 238 330 - -
Lac5g0598 334 FunFam Replication factor C subunit 4 174 237 - -
Lac5g0598 334 Gene3D - 9 173 IPR027417 -
Lac5g0598 334 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 16 327 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Lac5g0598 334 Gene3D - 174 237 - -
Lac5g0598 334 Pfam ATPase family associated with various cellular activities (AAA) 52 170 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac5g0598 334 SMART AAA_5 48 180 IPR003593 GO:0016887(InterPro)
Lac5g0598 334 FunFam Replication factor C subunit 4 10 173 - -
Lac5g0598 334 SUPERFAMILY post-AAA+ oligomerization domain-like 237 328 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Lac5g0598 334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 236 IPR027417 -
Lac5g0598 334 CDD HLD_clamp_RFC 173 235 IPR047854 -
Lac5g0598 334 Pfam Replication factor C C-terminal domain 238 323 IPR013748 -
Lac5g0598 334 FunFam replication factor C subunit 2 238 330 - -
Lac5g0598 334 CDD AAA 31 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0958 Lac-Chr2:7569099 Lac5g0598 Lac-Chr5:6758796 1.80E-50 dispersed
Lac5g0598 Lac-Chr5:6758796 Lac8g1831 Lac-Chr8:36582934 3.60E-55 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0598 K10755 - csv:101208984 632.098