Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0604 ATGGCATCTTCAAGGTCCCCGAATGGATCGTCCGATGATATCGTCGACACCACCCCGTTGATGGGGAATCCCAACCGCTCGCTCGATGATGCGCATTCGGGTCGGCGATTTGTGCAGAGGCAAAGTTTGCGTCAGGCGGCGAGGTTTCTGAGGCAGGCCAGTAGTCGGAGGACGATGCGCGAACCGTCTATGTTGGTCCGAGAGACGGCTGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCGTATTCCAAGCCGGTTGTGATCCTTGACATCGTGTGGAATTTCGCTTTTGTTGTTGTTGCTGCTACCGTTTTGGTTCTGAGCCGCGACGAGTCTCCTACAATGCCTTTGAGGCTATGGATTGTGGGCTACGCGTTCCAATGCATTCTCCACATGGTGTGTGTTTGTGTTGAGTATCGTCGGCGTCGGCAACGGCGATATTCAGCCTTCAATTCGATGGATGAGGAAAATTCTGCGCGCGGGCTATCGGGTTTGGGGTCGAGAGGAAACTCGAGTCATTATGTATCACTGGCACAATTGGATGAGAACGATACCAGTGTAGCAAAGCACCTTGAATCTGCAAATACAATGTTTTCCTTCATTTGGTGGATTATTGGATTCTACTGGGTATCTGCAGGAGGTCAATCTTTAGCACACGTTTCCCCTCTGCTTTACTGGTTATGTATCATATTCTTGGGTTTTGATGTGTTCTTTGTGGTTTTCTGTGTTGCTTTGGCATGTATCATTGGAATTGCTGTTTGCTGCTGTCTTCCCTGTATCATTGCACTTTTATATGCTGTAGCAGACCAGGAGGGAGCAACTAAAGAAGATGTTGAACAGTTGTCAAAATTTAAATTCAGAAAGGTTGACGACGATGCCGAGAAATTCTCCAGTGATGTACAAGAACCCCTTGGTGGAATAATGACCGAGTGTGGTACAGATTCACCCATCGAACGCACCCTGTCACAGGAGGATGCGGAGTGCTGCATCTGCCTCTCCGCGTACGATGATGGCGTCGAGCTACGAGAGCTCCCGTGTGGTCACCACTTCCACTGTGCCTGTGTCGATAAGTGGCTGTATATCAATGCTACCTGTCCTCTCTGCAAGTACAACATCTTGAAAAATAGCAATCTTGCTCAAGAGGAAGTTTAA 1155 49.0 MASSRSPNGSSDDIVDTTPLMGNPNRSLDDAHSGRRFVQRQSLRQAARFLRQASSRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLVLSRDESPTMPLRLWIVGYAFQCILHMVCVCVEYRRRRQRRYSAFNSMDEENSARGLSGLGSRGNSSHYVSLAQLDENDTSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAHVSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFKFRKVDDDAEKFSSDVQEPLGGIMTECGTDSPIERTLSQEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKNSNLAQEEV 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6863636 6874826 + Lag0017688.1 Lac5g0604 607246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0604 384 ProSiteProfiles Zinc finger RING-type profile. 329 370 IPR001841 -
Lac5g0604 384 SUPERFAMILY RING/U-box 320 376 - -
Lac5g0604 384 SMART ring_2 329 369 IPR001841 -
Lac5g0604 384 MobiDBLite consensus disorder prediction 1 32 - -
Lac5g0604 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 376 IPR013083 -
Lac5g0604 384 PANTHER TARGET OF ERK KINASE MPK-1 42 374 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Lac5g0604 384 Pfam Ring finger domain 328 370 IPR001841 -
Lac5g0604 384 MobiDBLite consensus disorder prediction 1 24 - -
Lac5g0604 384 FunFam E3 ubiquitin-protein ligase At1g12760 315 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0604 Lac-Chr5:6863636 Lac7g0266 Lac-Chr7:2077153 1.80E-122 dispersed
Lac5g0604 Lac-Chr5:6863636 Lac10g2365 Lac-Chr10:36392486 6.80E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0604 - - - 0.0