Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g0613 | ATGGGATTTCCTCTACTTGGTGAAACCCTGCAGTTCTTTGCTCCCAATACCTCCTCTGATGTTCCTCCTTTCATCAGAAAGAGAGTGGATAGGTATGGACCGATATTCAGAACAAGTTTGGTGGGAAGACCGCTGATTGTCTCAACAGACCCCGACTTGAGTTACTTTATCTTTCAACAAGAGGGACAATTGTTCCAAAGCTGGTATCCAGATACCTTCACAGAGATATTTGGAAAACAAAATGTTGGTTCGTTGCACGGTTTCATATATAAATATCTGAAGAACATGGTTCTTCATCTTTTTGGCCCTGAAAGTCTGAGAAAGATGATACCTGAAGTTGAGGCTGTAGCAACCAGAAGATTGAGACAATGGTCATCTCATGACTCAGTTGAATTGAAGGATAACACTGCAAGTATGATTTTTGATTTGACTGCAAAGAAGCTGATTAGTTATGATTCAGAAAATTCTTCGGAGAATTTGAGAGAGAACTTTGTTGCATTCATACAAGGCTTGATCTCCTTCCCTCTAAATGTTCCCGGAACTGCTTACAACAAATGCTTACAGGGCAGGAAAAGAGCAATGAGGATGCTGAAAAACATGTTACAAGACAGGCGGGCAAATCCAAGGAAACAGCAAATAGATTTTTACGATTTTGTTCTCGAAGAACTGCAGAAAGATGGAACTCTTCTCACTGAGGAAATTGCTTTGGACCTTATGTTTGTACTACTTTTCGCGAGCTTTGAAACTACTTCACTTGCTATTACTGCAGCCATTAAATTTCTCCTCAACAATCCTCATGTGCTGGAGGAGCTGACGGCTGAACATGAGGGAATATTGAAGAGAAGGGAAAATTCAGATTCTGGGCTTACATGGGGAGAATACAAATCCATGACATTCACATTTCAGTTCATCAATGAAACTGTGAGACTGGCAAATATAGTTCCGGGAATCTTTCGAAAAGCGCTGAGAGATATCCAGTTTAAGGGATATACCATTCCAGCAGGGTGGGCTGTTATGGTCTGCCCTCCGGCCGTGCACTTAAATCCAGAAAAGTACGTCGATCCCCTCACTTTTAACCCATGGCGATGGGAGAAATCTGAACTGAATGGAGCATCTAAACATTTCATGGCTTTCGGTGGGGGTATGAGGTTCTGTGTTGGTACAGATTTTACCAAAGTGCAAATGGCTGTGTTTCTCCATTGCCTGGTTACAAAGTACAGGTTCAAGGCAATCAAAGGAGGCAATATCGTCCGAACGCCCGGTTTACAGTTTCCCGACGGCTTCCACGTTCAGATCATGGAGAAATAG | 1308 | 42.43 | MGFPLLGETLQFFAPNTSSDVPPFIRKRVDRYGPIFRTSLVGRPLIVSTDPDLSYFIFQQEGQLFQSWYPDTFTEIFGKQNVGSLHGFIYKYLKNMVLHLFGPESLRKMIPEVEAVATRRLRQWSSHDSVELKDNTASMIFDLTAKKLISYDSENSSENLRENFVAFIQGLISFPLNVPGTAYNKCLQGRKRAMRMLKNMLQDRRANPRKQQIDFYDFVLEELQKDGTLLTEEIALDLMFVLLFASFETTSLAITAAIKFLLNNPHVLEELTAEHEGILKRRENSDSGLTWGEYKSMTFTFQFINETVRLANIVPGIFRKALRDIQFKGYTIPAGWAVMVCPPAVHLNPEKYVDPLTFNPWRWEKSELNGASKHFMAFGGGMRFCVGTDFTKVQMAVFLHCLVTKYRFKAIKGGNIVRTPGLQFPDGFHVQIMEK | 435 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 7056717 | 7059465 | - | Lag0017697.1 | Lac5g0613 | 607255 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g0613 | 435 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 378 | 387 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac5g0613 | 435 | FunFam | Cytochrome P450 family protein | 1 | 434 | - | - | |
| Lac5g0613 | 435 | SUPERFAMILY | Cytochrome P450 | 2 | 431 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g0613 | 435 | Gene3D | Cytochrome P450 | 1 | 434 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g0613 | 435 | PANTHER | CYTOCHROME P450 26 | 1 | 406 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER) | |
| Lac5g0613 | 435 | PRINTS | P450 superfamily signature | 385 | 396 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g0613 | 435 | PRINTS | P450 superfamily signature | 376 | 385 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g0613 | 435 | PRINTS | P450 superfamily signature | 302 | 313 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g0613 | 435 | PRINTS | P450 superfamily signature | 245 | 262 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g0613 | 435 | CDD | CYP90-like | 28 | 432 | - | - | |
| Lac5g0613 | 435 | Pfam | Cytochrome P450 | 20 | 418 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g0613 | 435 | PRINTS | E-class P450 group IV signature | 330 | 344 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g0613 | 435 | PRINTS | E-class P450 group IV signature | 346 | 364 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g0613 | 435 | PRINTS | E-class P450 group IV signature | 369 | 385 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g0613 | 435 | PRINTS | E-class P450 group IV signature | 385 | 403 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g0613 | 435 | PRINTS | E-class P450 group IV signature | 297 | 313 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g0613 | 435 | PRINTS | E-class P450 group IV signature | 23 | 46 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac5g0613 | Lac-Chr5:7056717 | Lac8g2762 | Lac-Chr8:44946909 | 2.10E-71 | dispersed | |
| Lac10g0357 | Lac-Chr10:2801822 | Lac5g0613 | Lac-Chr5:7056717 | 2.60E-107 | transposed | |
| Lac4g2088 | Lac-Chr4:40572981 | Lac5g0613 | Lac-Chr5:7056717 | 1.50E-118 | transposed | |
| Lac6g0434 | Lac-Chr6:3550269 | Lac5g0613 | Lac-Chr5:7056717 | 1.20E-10 | transposed | |
| Lac5g0613 | Lac-Chr5:7056717 | Lac7g1577 | Lac-Chr7:18166218 | 8.30E-60 | wgd |
Pathway information