Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0623 ATGCTGATGGACCCTTTCAATTCCTCCTCTCATCATCACCATAATTTCCACAACAACAATCAAGAAGATGAAGAAGAAACCACCTCCTCAGATCTCCAATTTCATCACCACCCCACCACTTCAAATTCCCTCCAAATGCGTCAGCTACTCATCCGTTGCGCCGATTTCATTTCTCACTCTGATTTCCTCTCCGCCCATCGCCTTCTTTCCCTTCTCTCTTCCAACTCTTCCCCTTACGGCGACGCCACTGAGAGATTGCTTCATTATTTCTCCACTTCTCTCTCTCGCCGCCTTCCTTCCGCTTCTTCTTCTTCTTCGGTTCTTCGTCCTCGTGATGACGATGGCGGCGGTGACAAAGACGACGACGACAAAGGGATTCAGTCTTGTTACTTGTCGTTGAATCAGATCACACCCTTTGTTAGATTCAGTCATCTGACTGCGAATCAGGCCATTTTGGAGGCGATTGAGGAAGGAGGGATTCACGTGGTGGATTTTGATATAATGCATGGAGTTCAATGGCCGCCTCTCATGCAGGCTTTGGCCGAGCGTTTTCCTTCTCCTATGCTCAGGATTACTGCCACTGGTCGTGATCTTAACTTTCTTCACAAGACCGGTGATAGGCTTTCCAAATTTGCTCAGTCTCTTGGCTTGAGGTTTCACTTTCATCCTCTTCTTCTTCTCAATGACCACGACCACCACCGCCTCATCCCCGCCGCTCTTACGCTCTTCCCCGACGAAGCACTCGCCGTCAACTGCGTCCTCTACTTGCACAGGCTATTGAAGGAGGATCTTCGGCTATTGCTTCATAAAATCAAGGGTTTGAATCCAAAAGTGGTGACAATAGCTGAAAAGGAAGCGAATTTCAACCACCCTTTATTCATGCAAAGATTTCTAGAGGCATTGAATCATTACTCTCTAATATTTGACTCATTGGAAGCAACTTTGCCTCCAAATAGTAGGGAGAGGCTGGCAGTGGAGCAGGTTTGGTTTGGGAGGGAAATAGACGACGTCGTTTCAGGGGAAGGGAACAAGAGAAGGCAACGCCATGAGAGGTATGAATCATGGGAGATAATGCTTAAAAGTTTGGGCTTTTCTAATATTCCTTTGAGCCCTTTTGCCCTATCACAAGCCAAACTCCTTCTAAGGCTTCATTATCCTTCTGAAGGTTACCATCTTCAAATCCTTCATGATTCTCTCTTTCTTGGTTGGCAAAATAGACCACTTTTTTCAGTCTCTTCATGGCATTGA 1248 46.39 MLMDPFNSSSHHHHNFHNNNQEDEEETTSSDLQFHHHPTTSNSLQMRQLLIRCADFISHSDFLSAHRLLSLLSSNSSPYGDATERLLHYFSTSLSRRLPSASSSSSVLRPRDDDGGGDKDDDDKGIQSCYLSLNQITPFVRFSHLTANQAILEAIEEGGIHVVDFDIMHGVQWPPLMQALAERFPSPMLRITATGRDLNFLHKTGDRLSKFAQSLGLRFHFHPLLLLNDHDHHRLIPAALTLFPDEALAVNCVLYLHRLLKEDLRLLLHKIKGLNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATLPPNSRERLAVEQVWFGREIDDVVSGEGNKRRQRHERYESWEIMLKSLGFSNIPLSPFALSQAKLLLRLHYPSEGYHLQILHDSLFLGWQNRPLFSVSSWH 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7314125 7315489 - Lag0017707.1 Lac5g0623 607265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0623 415 ProSiteProfiles GRAS family profile. 37 415 IPR005202 -
Lac5g0623 415 MobiDBLite consensus disorder prediction 100 121 - -
Lac5g0623 415 Pfam GRAS domain family 46 414 IPR005202 -
Lac5g0623 415 MobiDBLite consensus disorder prediction 1 39 - -
Lac5g0623 415 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 30 414 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0010014(PANTHER)|GO:0043565(PANTHER)
Lac5g0623 415 MobiDBLite consensus disorder prediction 15 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0623 Lac-Chr5:7314125 Lac8g2990 Lac-Chr8:46753538 1.40E-64 dispersed
Lac5g0623 Lac-Chr5:7314125 Lac3g0856 Lac-Chr3:6861724 1.10E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23828 PF03514 GRAS 8.50E-118 CL0063 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0623 K27746 - csv:101213853 564.303