Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0656 ATGCTTAGATCTTCACGGGATCTTCGGATCCGACACTGTTTTGGAGGGTTTAGTTTCATGTTTTCTGTCGATTTTCGTCTTCTTCTTTGTTTGTTTCTGGGATTTGTCGACATTGCTACGAGATTTTCGAGCTCGATCGTTGGAGTTGTTGTAATGGGGAGGACTGATGATAATGTTGCTATAATTGGGGATTGGGTGCCTCCAAGTCCCAGCCCAAGAACCTTCTTCTCAGCAATGCTGGGGGAGGATGTTGGTTCTAGACCTGCAATGGATACTACCAATATCAGTGATAAAACTGAAGAGCTCTTTCTCAGGCCTCGAGAACATATGGTATCGGAGAACGCCGTTGCGAGAGGCGGGATCCTGGGCATCCATTCGAGTGACCGGTCGATGGATTTAGGTTCGTTCTCGGAGCAGAAATTCCGTGGAGGGCTTGTGGAAAGGATTGCAGCTAGAGCTGGATTTAATGCTCCAAGATTGAATACAGAGAGCATTAGATCCACATCCACAGATCACTCGTTGAATTCAGATGTCAAATCTCCTTACTTAACGATACCGCCCGGTCTCAGTCCAACTACATTGCTAGATTCCCCAGTTTTTCTTTCAAATTCACTGGCTCAGCAATCTCCCACAACTGGAAAGTTCTCATTTTTGCCAAATGTTAGTAATCGGAGCTCGACGATGATGTCGGAGGCCAACAATAAAGGAAGCGACAACCCATTCAACGTTAACAGTACATCATTTGCATTCAGACCCGGTGTGGAATCAGGATCGTCCTTTTTTCTCGGTGCAGCAAGCAAAACAGCTTCTGCTACCATTCTTCCACAATCTTGTCCAAGAATTGAGGTTCCACTTCCAGCTCCACGTTCAGAAAATTCTTTTCAATCTCATCTAGTAGAACCATCTCTGTCTTTACCCCAAAATAGAATCAGTCATCATCCTCAAATGGGACTCTCTACATCATGCGCGGAGAGGGACGATGGGGGAAAGACTGTGTCAGACGATCAAAGACCCTTTGATTCTCTGTGTGGAGGTGGTGAACATTCTTCACCATTGGACGAGCAACCGGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTGGTGGTTGCGGTGCTCCCTCGGAGGATGGATATAATTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGCGAGTATCCCCGGAGTTATTACAAGTGCACACATCCAAACTGTCAGGTCAAGAAGAAAGTCGAGCGATCTCACGAGGGCCATATAACAGAGATCATCTATAAAGGAGCACATAACCACCCAAAGCCCTCGCCAAACCGGCGAGCAGCAATTGGACCTTCTGATTCCCAAATCACTATGCAACTAGAAATCCCTGCACAAGCAGGCCAACAGAGTGCTGAAGGTCCTCTATGGGAAGATTCACAAAAAGGGATTCCAACTGGAGCTCCTGATTGGATGCATGACAACCTTGAGGTGACTTCTTCAGCATCCTTGGGTCCTGAATATGGCAATCAGCCTAACCCTTTACAGGCTCAAAATGGCAGTCATATTGAAACAGTTGAGGCCGTTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGAACACATGGCAGTATAACATTGGGCTATGAGGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTCGACGCTTATGTAACAGAAATGAGTGGTGCCACTAGAGCTATCCGCGAGCCTAGAGTTGTTGTCCAGACTACCAGTGAAGTGGATATTCTGGACGACGGCTATCGTTGGCGCAAATACGGCCAGAAGGTTGTGAAAGGAAATCCAAACCCTAGGAGTTACTACAAGTGCACGAATCCCGGCTGCACGGTGAGGAAGCACGTCGAGCGGGCGTCACATGACCTGAAGTCTGTGATCACCACGTATGAAGGAAAGCACAATCATGATGTTCCTGCTGCTCGCAATAGCAGCCACATCAGTTCTGGTACGTCCAGTCCAGTAACCGTGCAAAACTCGACCGCAGCAATTCAAAGTCATGTTCACAGGCCAGGACCACCCCAGCCTCAGAACACCATTCCAAGATTTGAAAGGCCGGCCTTTGGCCTTGCTGGAAGACAGCAGATGGGCACTGCCCATGCCTTCTCTTTTGGAATGAACCACCAGCCTGGACTGGGAAATCTGACAATGGCAGCAGTTGGCCAAGCCAAGCTTCCTGTTCTGCCAATGCATCCATACTTAGCACAAGCACACCATGTTAATGAAATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGATCTTGGCTTGAACTTTTCCAATGGTTCAACCGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA 2394 47.37 MLRSSRDLRIRHCFGGFSFMFSVDFRLLLCLFLGFVDIATRFSSSIVGVVVMGRTDDNVAIIGDWVPPSPSPRTFFSAMLGEDVGSRPAMDTTNISDKTEELFLRPREHMVSENAVARGGILGIHSSDRSMDLGSFSEQKFRGGLVERIAARAGFNAPRLNTESIRSTSTDHSLNSDVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFSFLPNVSNRSSTMMSEANNKGSDNPFNVNSTSFAFRPGVESGSSFFLGAASKTASATILPQSCPRIEVPLPAPRSENSFQSHLVEPSLSLPQNRISHHPQMGLSTSCAERDDGGKTVSDDQRPFDSLCGGGEHSSPLDEQPDEGEQRGSGDSMAGGGCGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPSPNRRAAIGPSDSQITMQLEIPAQAGQQSAEGPLWEDSQKGIPTGAPDWMHDNLEVTSSASLGPEYGNQPNPLQAQNGSHIETVEAVDASSTFSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSPVTVQNSTAAIQSHVHRPGPPQPQNTIPRFERPAFGLAGRQQMGTAHAFSFGMNHQPGLGNLTMAAVGQAKLPVLPMHPYLAQAHHVNEMGFLLPKGEPNVEPTSDLGLNFSNGSTVYQQIMSRLPLGPEM 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8070200 8074188 + Lag0017740.1 Lac5g0656 607298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0656 797 MobiDBLite consensus disorder prediction 648 668 - -
Lac5g0656 797 ProSiteProfiles WRKY domain profile. 378 436 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0656 797 MobiDBLite consensus disorder prediction 654 668 - -
Lac5g0656 797 SMART WRKY_cls 592 651 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0656 797 SMART WRKY_cls 377 435 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0656 797 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 244 672 IPR044810 GO:0003700(InterPro)
Lac5g0656 797 Gene3D WRKY domain 373 437 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0656 797 MobiDBLite consensus disorder prediction 307 384 - -
Lac5g0656 797 FunFam WRKY transcription factor 368 437 - -
Lac5g0656 797 FunFam WRKY transcription factor 33 579 645 - -
Lac5g0656 797 SUPERFAMILY WRKY DNA-binding domain 376 436 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0656 797 Pfam WRKY DNA -binding domain 593 650 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0656 797 Pfam WRKY DNA -binding domain 378 434 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0656 797 ProSiteProfiles WRKY domain profile. 587 652 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0656 797 Gene3D WRKY domain 579 645 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0656 797 SUPERFAMILY WRKY DNA-binding domain 584 652 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0656 797 MobiDBLite consensus disorder prediction 526 560 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0371 Lac-Chr12:4292126 Lac5g0656 Lac-Chr5:8070200 5.30E-60 dispersed
Lac13g0351 Lac-Chr13:2517778 Lac5g0656 Lac-Chr5:8070200 1.80E-71 dispersed
Lac3g1676 Lac-Chr3:16614941 Lac5g0656 Lac-Chr5:8070200 6.20E-95 dispersed
Lac5g0656 Lac-Chr5:8070200 Lac5g0962 Lac-Chr5:14557435 3.50E-72 dispersed
Lac5g0656 Lac-Chr5:8070200 Lac9g0429 Lac-Chr9:8038047 6.60E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23829 PF03106 WRKY 3.30E-24 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0656 K18835 - csv:101207853 1278.46