Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0687 ATGGCCTCCAGCTCCTCCAAGAAACATGATCACTACAAGGGAATCCGCTGCCGGAGCGGCAAATGGGTGTCGGAGATTCGCGAGCCACGCAAAACTACCCGAATATGGCTCGGGACGTATCCGACGCCCGAGATGGCTGCCGCTGCCTATGATGTCGCCGCTCTCGCCCTCAAGGGTTGCAATGCTGTTCTCAACTTCCCTGACTCAATTGGGTCCTACCCGGTTCCGGCTTCCATGTCTCCGGCCGATATCCGTGTCGCTGCCGCTGCTGCTGCCGCTTCTAAAAGGGTTGATCATCAAGGAGAAAGAAATTACCATGGCGGCCACCATCAATCTCCACCACTCGACGAGTTTGTCGACGAAGAGGCGCTGTTTGGAATGCCTAATCTTCTGGTCGACATGGCGGAGGGAATGCTGTTGTCGCCGCCGCGAATGAGCTCGTCGCCGCCACGACAGGACTACTACTCGTGGAACTCCGGTGGAGATGAAAATCTATGGAGCTACCAATAG 510 56.47 MASSSSKKHDHYKGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPDSIGSYPVPASMSPADIRVAAAAAAASKRVDHQGERNYHGGHHQSPPLDEFVDEEALFGMPNLLVDMAEGMLLSPPRMSSSPPRQDYYSWNSGGDENLWSYQ 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8529544 8530053 + Lag0017771.1 Lac5g0687 607329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0687 169 CDD AP2 11 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g0687 169 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g0687 169 Pfam AP2 domain 11 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g0687 169 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677(InterPro)
Lac5g0687 169 SMART rav1_2 11 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g0687 169 MobiDBLite consensus disorder prediction 145 169 - -
Lac5g0687 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 104 IPR051032 -
Lac5g0687 169 MobiDBLite consensus disorder prediction 142 169 - -
Lac5g0687 169 FunFam Ethylene-responsive transcription factor 2 10 68 - -
Lac5g0687 169 Gene3D AP2/ERF domain 10 68 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0687 Lac-Chr5:8529544 Lac5g2895 Lac-Chr5:47149366 3.10E-47 dispersed
Lac5g0687 Lac-Chr5:8529544 Lac11g2138 Lac-Chr11:37419033 3.30E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23832 PF00847 AP2 5.60E-11 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0687 - - - 0.0