Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g0759 | ATGCAGTCTATTAATGCTGTTGAACATGAATTACTTTCTGGAAGGTTTCAATTTAGTAACAGAATGTTGGAGAGTTTTGCTTACAAGAGCGTGAAGATTGTAGTCTTCTCAAATAAACTCAACTTCCTTATGCCTTTTGGGCCTCTAGCAATTCTTGTGGATAAGTTGGCTGGTCATAATAGTTGGGTCTTCTTCCTAAGTCTATTGGGTATCATACCGTTGGCTGAGCGGTTAGGTTATGCCACAGAGCAGCTGGCTTTTTACACAGGACCTACAGTTGGGGGTCTACTAAATGCTACTTTTGGAAATGCAACAGAACTAATTATATCAATTTTTGCACTGAAAAATCAAATGATACGTGTTGTTCAGCTATCATTACTAGGCTCAATTCTGTCGAACATGTTGCTGGTGCTTGGTTGTGCATTCTTCTGTGGTGGGATTGTTTTCTATAAAAAGGAACAGACTTTTAACAAGGCAACTGCTGTTGTCAACTCAGGATTGTTGTTAATGGCTGTCATGGGCCTGCTTTTTCCTGCTCTTCTCTACTACACCCACAGTGAAGCCCATTTTGGGAAGTCGGAATTGGCACTCTCCAGATTCAGTAGTTGCATTATGCTTCTGGCTTATGCTGCTTATCTTTTCTTCCAATTGAAAAGTCAGAGGAATCTTTATTCTTCTGTTTATGAGGAAGAAACTGAGAGCGAAGAAAGCTCAGATGAAGATGAAGCTCCTGAGATCTCCAAGTGGGAATCAGTTATCTGGTTATTAATTTTGACGGCCTGGATTTCTGTTTTATCAGAATACTTGGTTGATGCAATCGAAGTTGCATCTGTATCATTGAAAATCCCAGTGACGTTTATTAGTGTTATTCTGCTTCCTATTGTGGGGAATGCTGCTGAGCATGCAAGCGCTATTATGTTTGCTATGAAAGATAAGCTTGATATTTCTCTGGGTGTAGCTATCGGATCATCAACCCAGATCTCTATGTTCGGTATTCCTTTCTGTGTGGTAACTGGGTGGATTATGGGACAACCGATGGACTTGAACTTTAAACTCTTCGAGACGGCGACACTTTTTATAACTGTAATAGTAGTAGCTTTCTTGCTGCAGGAAGGAACTTCAAATTACTTCAAGGGACTGATGCTTATCCTTTGTTATCTGATAGTCGCAGCTAGTTTTTTCGTGCACGTCGATCCTCCTCTACCTGAGAACAAACTGGGGAGTTTGAAAGCATAG | 1236 | 40.61 | MQSINAVEHELLSGRFQFSNRMLESFAYKSVKIVVFSNKLNFLMPFGPLAILVDKLAGHNSWVFFLSLLGIIPLAERLGYATEQLAFYTGPTVGGLLNATFGNATELIISIFALKNQMIRVVQLSLLGSILSNMLLVLGCAFFCGGIVFYKKEQTFNKATAVVNSGLLLMAVMGLLFPALLYYTHSEAHFGKSELALSRFSSCIMLLAYAAYLFFQLKSQRNLYSSVYEEETESEESSDEDEAPEISKWESVIWLLILTAWISVLSEYLVDAIEVASVSLKIPVTFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVTGWIMGQPMDLNFKLFETATLFITVIVVAFLLQEGTSNYFKGLMLILCYLIVAASFFVHVDPPLPENKLGSLKA | 411 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 9927454 | 9930900 | + | Lag0017843.1 | Lac5g0759 | 607401 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g0759 | 411 | Gene3D | - | 238 | 395 | IPR044880 | - | |
| Lac5g0759 | 411 | Gene3D | - | 91 | 230 | IPR044880 | - | |
| Lac5g0759 | 411 | FunFam | Vacuolar cation/proton exchanger | 239 | 395 | - | - | |
| Lac5g0759 | 411 | FunFam | Vacuolar cation/proton exchanger | 91 | 230 | - | - | |
| Lac5g0759 | 411 | NCBIfam | calcium/proton exchanger | 44 | 394 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) | |
| Lac5g0759 | 411 | Pfam | Sodium/calcium exchanger protein | 251 | 393 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac5g0759 | 411 | Pfam | Sodium/calcium exchanger protein | 62 | 217 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac5g0759 | 411 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 23 | 399 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g1873 | Lac-Chr1:40454437 | Lac5g0759 | Lac-Chr5:9927454 | 1.30E-95 | dispersed | |
| Lac5g0759 | Lac-Chr5:9927454 | Lac9g1936 | Lac-Chr9:39140096 | 9.90E-164 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac5g0759 | K07300 | - | csv:101205761 | 635.565 |