Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0781 ATGGCTTCCACGGCGGAGGAAACAACAACCATCACTTCCTCCGACAACGACGACGACCAAGAAGAACATCACTACGCTTATGCCGTGCAGCTACTTACCTTGTCGGTGCTGCCGATGACACTGCAAACAGCCTTCGAGCTCGGCTTGTTTGAGATCTTGGCCAAGGCAGGCGATGGGGCCGAGCTCTCTCCGGTGGAGATAGCTGCTCAGATAACCACTACGAACCCTGATGCGGCGTCGATGGTTGATCGGATTTTAAGGCTTCTAGCAAGCCATGCGGTGGTTGGTTGCTCTGTGGCCTTTGATGAAAATGGGAATCTGCAGAGACTCTATAGCCTCACACCGGTTTCTAAGTATTATGTTATTAATGAACATGGAGTGTCGTTCGGTCCTCCTTTATCGTTGATTCAAGATAAAGTCTTTCTCCATAGCTGGAGTGAGCTGAAGAACGCAGTTATTGAAGGAGGAGTACCTTTCAACAGGGCTCATGGGGGAGTTCATGCCTTTGAATATCCAGGCTTGGATCCAAGATTTAATCAAGTTTTCAACAATGCAATGAAAAATCACACCACAATGTCCATCAACAAAATAGTCAAGTCCTACAAGGGCTTTGAAAACATGAAGCAACTAGTTGATGTTGGTGGTGGCGTAGGTGTCACCCTTCAAATCATCACTTCTTCGTATCCTTCAATCAAAGGCATCAACTTCGACTTGCCTCATGTCATTCAAGATGCCCCTTCCTATCCCGGTGTAGAACATGTAGGAGGAGACATGTTTGAGAAAGTTCCAAAGGGAGATGCTATTTTCATGAAGTGGATACTTCATGATTGGAGCGATGAACATTGCGTAAAATTGTTGAAAAATTGCCATGCTGCAATCCCAAATGATGGAAAAGTAATCGTGGCAGAGGGAGTGCTTCCGGTCGTGCCTGAGACCACAAATGCAATGAAATCCATCACCCAAGCCGATGTGCTTATGATGACTCAAAACCCAGGAGGAAAGGAGCGAACTCGTGATGAATTTAAAGCTCTTGCAACCAAAGCTGGGTTTAAACACATCTTCTTTCAGTGTTTTGTATGCAATCTCTGGATTATAGAGTTTCTAAAATGA 1110 45.41 MASTAEETTTITSSDNDDDQEEHHYAYAVQLLTLSVLPMTLQTAFELGLFEILAKAGDGAELSPVEIAAQITTTNPDAASMVDRILRLLASHAVVGCSVAFDENGNLQRLYSLTPVSKYYVINEHGVSFGPPLSLIQDKVFLHSWSELKNAVIEGGVPFNRAHGGVHAFEYPGLDPRFNQVFNNAMKNHTTMSINKIVKSYKGFENMKQLVDVGGGVGVTLQIITSSYPSIKGINFDLPHVIQDAPSYPGVEHVGGDMFEKVPKGDAIFMKWILHDWSDEHCVKLLKNCHAAIPNDGKVIVAEGVLPVVPETTNAMKSITQADVLMMTQNPGGKERTRDEFKALATKAGFKHIFFQCFVCNLWIIEFLK 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10402932 10405705 - Lag0017865.1 Lac5g0781 607423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0781 369 Pfam Dimerisation domain 39 90 IPR012967 GO:0046983(InterPro)
Lac5g0781 369 FunFam Caffeic acid 3-O-methyltransferase 3 120 - -
Lac5g0781 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 132 367 IPR029063 -
Lac5g0781 369 SUPERFAMILY Winged helix DNA-binding domain 19 121 IPR036390 -
Lac5g0781 369 FunFam Caffeic acid O-methyltransferase 121 369 - -
Lac5g0781 369 Pfam O-methyltransferase domain 145 351 IPR001077 GO:0008171(InterPro)
Lac5g0781 369 Gene3D - 6 120 IPR036388 -
Lac5g0781 369 PIRSF O-mtase 5 369 IPR016461 GO:0008168(InterPro)
Lac5g0781 369 Gene3D Vaccinia Virus protein VP39 122 369 IPR029063 -
Lac5g0781 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 369 IPR016461 GO:0008168(InterPro)
Lac5g0781 369 PANTHER O-METHYLTRANSFERASE 26 355 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0766 Lac-Chr5:10103739 Lac5g0781 Lac-Chr5:10402932 1.10E-37 dispersed
Lac5g0770 Lac-Chr5:10134536 Lac5g0781 Lac-Chr5:10402932 2.50E-46 dispersed
Lac5g0771 Lac-Chr5:10153641 Lac5g0781 Lac-Chr5:10402932 3.50E-160 dispersed
Lac5g0781 Lac-Chr5:10402932 Lac5g3088 Lac-Chr5:48558109 7.40E-110 dispersed
Lac5g0781 Lac-Chr5:10402932 Lac5g0787 Lac-Chr5:10494577 4.30E-126 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0781 K13066 - csv:101214916 572.007