Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g0795 | ATGGCGGACTCCGACAACGAATCCGCCGGCGGATACCAGAAATCGCCGGCGGCGTCGCCTCGGGAGCAGGACAGACTCCTCCCGATCGCGAACGTCGGCCGGATCATGAAGAAGGGCCTTCCAGGGAACGCCAAGATCTCAAAGGACGCTAAAGAGACCGTCCAAGAATGCGTCTCTGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGACAAGTGCCACAAGGAGAAGCGGAAGACCATCAACGGCGACGATTTGCTTTGGGCCATGGCCACCTTAGGCTTCGAAGACTATGTCGATCCTCTCAAGCTTTATCTCCAGCGCTTTCGAGAAATTGAAGGCGAGAGGACCACGCTCGCCTCTCGCGACGGCGCCGCCGCCGGATCTGCGAATACCGCGTTTTTTGACGGCGGCGGCGGTGAATTTGGAGGTGGGATGGGGATGACGATGACGATGAATCCCAATGCTTATGGCTCTAATGGGCCGCGTTGGGATGGGCCTCGCTTTAATACTACTGGTCGGCCCAGGTAG | 531 | 58.76 | MADSDNESAGGYQKSPAASPREQDRLLPIANVGRIMKKGLPGNAKISKDAKETVQECVSEFISFVTGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDGAAAGSANTAFFDGGGGEFGGGMGMTMTMNPNAYGSNGPRWDGPRFNTTGRPR | 176 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 10703103 | 10703633 | + | Lag0017879.1 | Lac5g0795 | 607437 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g0795 | 176 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 57 | 73 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac5g0795 | 176 | Gene3D | Histone, subunit A | 14 | 133 | IPR009072 | GO:0046982(InterPro) | |
Lac5g0795 | 176 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Lac5g0795 | 176 | SUPERFAMILY | Histone-fold | 23 | 140 | IPR009072 | GO:0046982(InterPro) | |
Lac5g0795 | 176 | PRINTS | CCAAT-binding transcription factor subunit A signature | 73 | 91 | - | - | |
Lac5g0795 | 176 | PRINTS | CCAAT-binding transcription factor subunit A signature | 92 | 110 | - | - | |
Lac5g0795 | 176 | PRINTS | CCAAT-binding transcription factor subunit A signature | 54 | 72 | - | - | |
Lac5g0795 | 176 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 14 | 125 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) | |
Lac5g0795 | 176 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 26 | 90 | IPR003958 | - | |
Lac5g0795 | 176 | MobiDBLite | consensus disorder prediction | 157 | 176 | - | - | |
Lac5g0795 | 176 | FunFam | Nuclear transcription factor Y subunit B-3 | 15 | 134 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac4g2401 | Lac-Chr4:43556351 | Lac5g0795 | Lac-Chr5:10703103 | 1.20E-40 | dispersed | |
Lac5g0795 | Lac-Chr5:10703103 | Lac9g1948 | Lac-Chr9:39267621 | 6.50E-48 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23834 | PF00808 | CBFD_NFYB_HMF | 1.90E-27 | CL0012 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac5g0795 | K08065 | - | csv:101204640 | 282.337 |