Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0795 ATGGCGGACTCCGACAACGAATCCGCCGGCGGATACCAGAAATCGCCGGCGGCGTCGCCTCGGGAGCAGGACAGACTCCTCCCGATCGCGAACGTCGGCCGGATCATGAAGAAGGGCCTTCCAGGGAACGCCAAGATCTCAAAGGACGCTAAAGAGACCGTCCAAGAATGCGTCTCTGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGACAAGTGCCACAAGGAGAAGCGGAAGACCATCAACGGCGACGATTTGCTTTGGGCCATGGCCACCTTAGGCTTCGAAGACTATGTCGATCCTCTCAAGCTTTATCTCCAGCGCTTTCGAGAAATTGAAGGCGAGAGGACCACGCTCGCCTCTCGCGACGGCGCCGCCGCCGGATCTGCGAATACCGCGTTTTTTGACGGCGGCGGCGGTGAATTTGGAGGTGGGATGGGGATGACGATGACGATGAATCCCAATGCTTATGGCTCTAATGGGCCGCGTTGGGATGGGCCTCGCTTTAATACTACTGGTCGGCCCAGGTAG 531 58.76 MADSDNESAGGYQKSPAASPREQDRLLPIANVGRIMKKGLPGNAKISKDAKETVQECVSEFISFVTGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDGAAAGSANTAFFDGGGGEFGGGMGMTMTMNPNAYGSNGPRWDGPRFNTTGRPR 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10703103 10703633 + Lag0017879.1 Lac5g0795 607437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0795 176 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0795 176 Gene3D Histone, subunit A 14 133 IPR009072 GO:0046982(InterPro)
Lac5g0795 176 MobiDBLite consensus disorder prediction 1 26 - -
Lac5g0795 176 SUPERFAMILY Histone-fold 23 140 IPR009072 GO:0046982(InterPro)
Lac5g0795 176 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Lac5g0795 176 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Lac5g0795 176 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Lac5g0795 176 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 125 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Lac5g0795 176 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Lac5g0795 176 MobiDBLite consensus disorder prediction 157 176 - -
Lac5g0795 176 FunFam Nuclear transcription factor Y subunit B-3 15 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2401 Lac-Chr4:43556351 Lac5g0795 Lac-Chr5:10703103 1.20E-40 dispersed
Lac5g0795 Lac-Chr5:10703103 Lac9g1948 Lac-Chr9:39267621 6.50E-48 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23834 PF00808 CBFD_NFYB_HMF 1.90E-27 CL0012 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0795 K08065 - csv:101204640 282.337