Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0828 ATGTTGTTGACCCCAAACAAGCCATCCTCTGGCAACAACACTCCCAGTAGCAACCACCACCACTCAAACGGTCGAAACGCCACGACCAACTGCCCCGCTACCGGGTCTGCCTCGATCGTCGCCACGAGCAATGAGCAGAGCCAACAATGCATCGTGCGGGAGCAAGACCAATACATGCCGATCGCTAATGTAATACGTATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCGGATGATGCCAAGGAGACCATCCAAGAATGCGTGTCGGAGTACATCAGCTTCATCACTGGTGAGGCCAACGAGCGGTGTCAGCGAGAGCAGCGCAAGACGGTGACGGCAGAGGATGTCCTCTGGGCTATGGGGAAGCTAGGCTTTGACGACTACATTGAGCCACTGACTGTGTTCCTCAATCGCTATCGTGAGTCGGAGAGCGATCGAATTCGTACGGAGCCAATCATGAGGCGCAATGTGGATTACGGGCAACAAGTGGGGATGCTACCACCGTATGGGCAGGCGTTTCAGATAGGGCACGTTCCGACGGGGATGTTCGATGCAATGGGTGGGTACTACGGCGGAGGGGGGAGCGGCGGATCGAGCTCGGGGAATGGTAGCCAGCTTTGA 627 55.66 MLLTPNKPSSGNNTPSSNHHHSNGRNATTNCPATGSASIVATSNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPIMRRNVDYGQQVGMLPPYGQAFQIGHVPTGMFDAMGGYYGGGGSGGSSSGNGSQL 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11509836 11510462 - Lag0017912.1 Lac5g0828 607470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0828 208 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 42 150 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Lac5g0828 208 FunFam Nuclear transcription factor Y subunit B-6 47 160 - -
Lac5g0828 208 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 59 122 IPR003958 -
Lac5g0828 208 ProSitePatterns NF-YB/HAP3 subunit signature. 89 105 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0828 208 Gene3D Histone, subunit A 45 164 IPR009072 GO:0046982(InterPro)
Lac5g0828 208 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Lac5g0828 208 PRINTS CCAAT-binding transcription factor subunit A signature 124 142 - -
Lac5g0828 208 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Lac5g0828 208 MobiDBLite consensus disorder prediction 1 35 - -
Lac5g0828 208 SUPERFAMILY Histone-fold 55 148 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0828 Lac-Chr5:11509836 Lac9g1948 Lac-Chr9:39267621 2.40E-33 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23835 PF00808 CBFD_NFYB_HMF 2.30E-25 CL0012 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0828 K08065 - csv:116402762 315.464