Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g0828 | ATGTTGTTGACCCCAAACAAGCCATCCTCTGGCAACAACACTCCCAGTAGCAACCACCACCACTCAAACGGTCGAAACGCCACGACCAACTGCCCCGCTACCGGGTCTGCCTCGATCGTCGCCACGAGCAATGAGCAGAGCCAACAATGCATCGTGCGGGAGCAAGACCAATACATGCCGATCGCTAATGTAATACGTATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCGGATGATGCCAAGGAGACCATCCAAGAATGCGTGTCGGAGTACATCAGCTTCATCACTGGTGAGGCCAACGAGCGGTGTCAGCGAGAGCAGCGCAAGACGGTGACGGCAGAGGATGTCCTCTGGGCTATGGGGAAGCTAGGCTTTGACGACTACATTGAGCCACTGACTGTGTTCCTCAATCGCTATCGTGAGTCGGAGAGCGATCGAATTCGTACGGAGCCAATCATGAGGCGCAATGTGGATTACGGGCAACAAGTGGGGATGCTACCACCGTATGGGCAGGCGTTTCAGATAGGGCACGTTCCGACGGGGATGTTCGATGCAATGGGTGGGTACTACGGCGGAGGGGGGAGCGGCGGATCGAGCTCGGGGAATGGTAGCCAGCTTTGA | 627 | 55.66 | MLLTPNKPSSGNNTPSSNHHHSNGRNATTNCPATGSASIVATSNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPIMRRNVDYGQQVGMLPPYGQAFQIGHVPTGMFDAMGGYYGGGGSGGSSSGNGSQL | 208 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 11509836 | 11510462 | - | Lag0017912.1 | Lac5g0828 | 607470 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g0828 | 208 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 42 | 150 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) | |
Lac5g0828 | 208 | FunFam | Nuclear transcription factor Y subunit B-6 | 47 | 160 | - | - | |
Lac5g0828 | 208 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 59 | 122 | IPR003958 | - | |
Lac5g0828 | 208 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 89 | 105 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac5g0828 | 208 | Gene3D | Histone, subunit A | 45 | 164 | IPR009072 | GO:0046982(InterPro) | |
Lac5g0828 | 208 | PRINTS | CCAAT-binding transcription factor subunit A signature | 105 | 123 | - | - | |
Lac5g0828 | 208 | PRINTS | CCAAT-binding transcription factor subunit A signature | 124 | 142 | - | - | |
Lac5g0828 | 208 | PRINTS | CCAAT-binding transcription factor subunit A signature | 86 | 104 | - | - | |
Lac5g0828 | 208 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Lac5g0828 | 208 | SUPERFAMILY | Histone-fold | 55 | 148 | IPR009072 | GO:0046982(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac5g0828 | Lac-Chr5:11509836 | Lac9g1948 | Lac-Chr9:39267621 | 2.40E-33 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23835 | PF00808 | CBFD_NFYB_HMF | 2.30E-25 | CL0012 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac5g0828 | K08065 | - | csv:116402762 | 315.464 |