Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0961 ATGCAAGAACCTTCAAGAAAGAAAGTTCCAAATCAATCTCATAGGTTTTATGAACAACCACAGCAAGAACCTGGATCCTATTACTGGCCTCCTATCAACCAACAAGGCTTGTATTCTGACGATGTAATCGAACACAATCACTTACCATCTGAGGCTTTCAAGCAGTACTGCAACCTTGAGTCGTCCTCAGGAACTAGTAGTTTCCCTCATCAAAATTCTTCCTCTACTGCTAGCTTCGCATCAAATGGAAGCCCTTCTTCACACCAAGAGTGCCATTCATACCCGCTAGACCCCTATTATTCTCCTGACAATGGATCACCTGTCAGTAGGTCTTGCTTGACAGATGAAGCTGCTGATGACTTAAGGCACAAGATCAGGGAATTGGAGACTGCAATGCTGGGACCTGATGCAGATAGGTTTGACATCTATTCCGTCACTAATCCAGTCAATCCTGTAGCACCTGTGCAGGAAGAAGGGTGGAAAGATGTGGCTGAGATAATCTCTAGAAAGGATTTGAAAGAGTTGCTTTGTGCTTGTGCACGAGCGATTGGAGAAAATGATATGTTGACTGGAGAATGGTTGGTGTCAGAATTACGTGGAATGGTTTCGGTTTCTGGTGAGCCGATCCAGCGCTTAGGAGCTTACTTGTTAGAGGCACTTGTTGCAAGGACAGCCTCTTCAGGTAGTTCTATCTACAAAGCCCTAAGATGTAAAGAGCCTATAGGTTCTGAACTGCTCTCATACATGCACATTCTCTATGAAGTTTGCCCTTATTTCAAGTTTGGGTACCTATCAGCAAATGGGGCTATTGCTGAAGCCATAAAAGGTGAAAATAGAGTTCACATCATTGATTTTCAGATAGCACAAGGAAATCAGTGGATCACATTGATGCAAGCTCTTGCCAATCGGCCTGGAGGGCCCCCAAAGATTACTATTACAGGCATAGATGATTCTACTTCAGCTTTTGCTCGAGGAGGGGGGCTCGAGATTGTAGGAAAAAGGTTGAAGATTTTGGCAGAGTCATTAATGGTACCCTTTGAGTTCCATGGGATTGCTGGCTCTGCTTCTGAAATTCAACGTGGAGATCTAAAAGTTCAATCAGGTGAGGCCATTGCTGTGAATTTTGCCATGGTGCTGCACCATATGCCAGATGAAAGCGTTGGCAGTCAGAATCACAGGGATCGAATTTTGCGGTTGGTTAAGAGCTTGTCTCCAAAAGTTACATTGAAATATTATACTGCTATTTTCGAATCCATAGACGTGACTCTTCCAAGAGAGCACAAGGAGCGGATCAATGTGGAGCAGCACTGTTTAGCTCGGGACATTGTTAATATAGTGGCATGTGAGGGAGCTGAAAGAGTCGAACGACATGAACTTCTCGGAAAGTGGAGATCAAGGTTCTTCATGGCGGGGTTTAAGCCACATCCTCTAAGCCCTTTTGTCAATGCTACAATAGAGGCACTGCTAAAGAACTACTGTGACAAGTACACACTTGAAGAAAGGGATGGAGCTTTATATCTCGGCTGGTTGAATCAAAATTTAGTTACCTCTAGTGCTTGGATTTGA 1566 44.0 MQEPSRKKVPNQSHRFYEQPQQEPGSYYWPPINQQGLYSDDVIEHNHLPSEAFKQYCNLESSSGTSSFPHQNSSSTASFASNGSPSSHQECHSYPLDPYYSPDNGSPVSRSCLTDEAADDLRHKIRELETAMLGPDADRFDIYSVTNPVNPVAPVQEEGWKDVAEIISRKDLKELLCACARAIGENDMLTGEWLVSELRGMVSVSGEPIQRLGAYLLEALVARTASSGSSIYKALRCKEPIGSELLSYMHILYEVCPYFKFGYLSANGAIAEAIKGENRVHIIDFQIAQGNQWITLMQALANRPGGPPKITITGIDDSTSAFARGGGLEIVGKRLKILAESLMVPFEFHGIAGSASEIQRGDLKVQSGEAIAVNFAMVLHHMPDESVGSQNHRDRILRLVKSLSPKVTLKYYTAIFESIDVTLPREHKERINVEQHCLARDIVNIVACEGAERVERHELLGKWRSRFFMAGFKPHPLSPFVNATIEALLKNYCDKYTLEERDGALYLGWLNQNLVTSSAWI 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14555376 14557003 + Lag0018045.1 Lac5g0961 607603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0961 521 Pfam GRAS domain family 172 407 IPR005202 -
Lac5g0961 521 Pfam GRAS domain family 408 520 IPR005202 -
Lac5g0961 521 MobiDBLite consensus disorder prediction 1 33 - -
Lac5g0961 521 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 156 520 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lac5g0961 521 MobiDBLite consensus disorder prediction 61 91 - -
Lac5g0961 521 ProSiteProfiles GRAS family profile. 163 521 IPR005202 -
Lac5g0961 521 MobiDBLite consensus disorder prediction 61 100 - -
Lac5g0961 521 MobiDBLite consensus disorder prediction 14 33 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0961 Lac-Chr5:14555376 Lac9g1970 Lac-Chr9:39446838 1.20E-161 dispersed
Lac5g0961 Lac-Chr5:14555376 Lac10g3111 Lac-Chr10:45491599 1.30E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23837 PF03514 GRAS 2.80E-73 CL0063 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0961 K27748 - csv:101220072 928.317