Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g0962 | ATGGACCCCACTCACTCTCACTGGACTTCCACTGACCCCAACCTCGCCGATCCATCTCATCCCCGCCCACCGCCTCCTTCTGAACCTTCCTCCGCCGCTGCTGCTGCTGGCGCCAAGTACAAGCTAATGTCTCCGGCCAAGCTCCCGATCTCCAGTCCACTGCATTGGGTGGCTCCTTTATGCCCGTGTGGGTTATTCCATAAAATTGCTTTAGGGAATAATGCTGTTGTAGAGCCTTCTCCGACTACTGGATCCCTTACCAAGCTTCCAATGGCACATGACTCTTCTAGCTCAGCTATTTATTCAATGACCACTGTGGCTTTCTCAAATACAAATGCCTCAGATGAAGGAAAATCCAGCTACTTCGAGTTCAAACCATATGTTGGACCGAATATGGTTCCTGCAGATCTGAGTCATAGGAAAGGTGAACAATCTAAAGAAGTTCAAGTTCAAGGTCAACCTCAACCATTTACTGCTCCACCCATGACTAAAAGTGAGATCAATGTCATTTCAAATGATTTGAGTCGATCCACCCAGATGGATACGGTTGCCTCAGGGGCTAGTGTTCCTGAAGTTGATGGAGAAGATTTCAACCATAATATGAACACAAGTACCAGGGTTCAGCCCCCACAGTCTGATCCAAAAGGCAGTGGCATTTCAGTAGCTTCTGATAGGTTATCTGATGATGGATATAACTGGCGGAAGTATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCACGTAGTTATTATAAATGTACACATCCTTCCTGTGAAGTGAAAAAGCTCTTTGAACGCTCTCATGATGGACAGATAACTGATATTATCTATAAGGGTACACATGATCATCCTAAGCCTCAGCCAAGTCGGCGATATACTGCCAGTGCTTCTGTGAATGTTCAAGAAGATGGGTCTGATAAGCCTTCACATTTAACTGGCCAAGATGACAGGTCGTGCGGCATATATGCTCAGACAGTGCATACCATTGAGCCAAATGGAACTTCAGAACCATCCCTTACTGCAAATGATAGCATCGCCGAAGGTGCAGGAACAACTCTGCCATGCAAGAATCATGATGAGGTTGATGACGATGACATATTCTCAAAGCGGAGGAAAATGGAACTTGGTGGTTTCGACGTCTGCCCAATGGTTAAGCCAATCAGGGAACCACGTGTTGTGGTTCAAACTCTAAGTGAGGTTGATATACTGGATGATGGGTATCGCTGGCGCAAATACGGCCAGAAGGTAGTGAGAGGGAACCCCAACCCGAGGAGTTATTATAAGTGCACAAATGTTGGATGTCCGGTTAGAAAACATGTCGAAAGAGCGTCCCATGACCCAAAAGCTGTTATAACTACATATGAGGGGAAACATAATCACGATGTTCCCACTGCAAAAACTAGTAGCCATGATGTCGCAGGCCCATCAACAATTGCACCATCAAGGTATAGACTTGAAGAGAGTGACACCATAAGCCTTGATCTTGGCGTTGGGATTGGGACAGGTGGCGATAATCGATCAAATGAATACAGGCAGGCATTGCATCCTCAACTGGTTGAAAACCAAACTCCAAATGGAAATTTCAACTTCGAAGTAGTTCAAGAAAACTCAGCCCCAACCTATTTTGGTGTTCTCAATAGAGGTATAAACCAGCATGGATCAAGAGAGAGTTTGAGCGAAAGCCGCCCAATGGAGATTGCTCCGCTAAACCATTCGTCTCACCCATATCCGCCGAGCATTGGGAGAATACTAACAGGGCCATAA | 1764 | 45.92 | MDPTHSHWTSTDPNLADPSHPRPPPPSEPSSAAAAAGAKYKLMSPAKLPISSPLHWVAPLCPCGLFHKIALGNNAVVEPSPTTGSLTKLPMAHDSSSSAIYSMTTVAFSNTNASDEGKSSYFEFKPYVGPNMVPADLSHRKGEQSKEVQVQGQPQPFTAPPMTKSEINVISNDLSRSTQMDTVASGASVPEVDGEDFNHNMNTSTRVQPPQSDPKGSGISVASDRLSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPSCEVKKLFERSHDGQITDIIYKGTHDHPKPQPSRRYTASASVNVQEDGSDKPSHLTGQDDRSCGIYAQTVHTIEPNGTSEPSLTANDSIAEGAGTTLPCKNHDEVDDDDIFSKRRKMELGGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHDVAGPSTIAPSRYRLEESDTISLDLGVGIGTGGDNRSNEYRQALHPQLVENQTPNGNFNFEVVQENSAPTYFGVLNRGINQHGSRESLSESRPMEIAPLNHSSHPYPPSIGRILTGP | 587 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 14557435 | 14564510 | - | Lag0018046.1 | Lac5g0962 | 607604 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g0962 | 587 | ProSiteProfiles | WRKY domain profile. | 222 | 286 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac5g0962 | 587 | SMART | WRKY_cls | 403 | 462 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac5g0962 | 587 | SMART | WRKY_cls | 227 | 285 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac5g0962 | 587 | MobiDBLite | consensus disorder prediction | 290 | 307 | - | - | |
| Lac5g0962 | 587 | Gene3D | WRKY domain | 219 | 287 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac5g0962 | 587 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Lac5g0962 | 587 | Pfam | WRKY DNA -binding domain | 228 | 284 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac5g0962 | 587 | Pfam | WRKY DNA -binding domain | 404 | 461 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac5g0962 | 587 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Lac5g0962 | 587 | FunFam | WRKY transcription factor 33 | 390 | 456 | - | - | |
| Lac5g0962 | 587 | FunFam | WRKY transcription factor | 217 | 287 | - | - | |
| Lac5g0962 | 587 | SUPERFAMILY | WRKY DNA-binding domain | 395 | 463 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac5g0962 | 587 | MobiDBLite | consensus disorder prediction | 277 | 317 | - | - | |
| Lac5g0962 | 587 | ProSiteProfiles | WRKY domain profile. | 398 | 463 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac5g0962 | 587 | SUPERFAMILY | WRKY DNA-binding domain | 225 | 286 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac5g0962 | 587 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 155 | 472 | IPR044810 | GO:0003700(InterPro) | |
| Lac5g0962 | 587 | MobiDBLite | consensus disorder prediction | 199 | 225 | - | - | |
| Lac5g0962 | 587 | MobiDBLite | consensus disorder prediction | 199 | 218 | - | - | |
| Lac5g0962 | 587 | Gene3D | WRKY domain | 390 | 456 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac5g0962 | 587 | MobiDBLite | consensus disorder prediction | 567 | 587 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac5g0656 | Lac-Chr5:8070200 | Lac5g0962 | Lac-Chr5:14557435 | 3.50E-72 | dispersed | |
| Lac5g0962 | Lac-Chr5:14557435 | Lac8g2724 | Lac-Chr8:44682047 | 5.30E-70 | dispersed | |
| Lac12g0371 | Lac-Chr12:4292126 | Lac5g0962 | Lac-Chr5:14557435 | 1.40E-68 | transposed | |
| Lac3g0214 | Lac-Chr3:1531808 | Lac5g0962 | Lac-Chr5:14557435 | 5.30E-42 | transposed | |
| Lac13g1257 | Lac-Chr13:11365838 | Lac5g0962 | Lac-Chr5:14557435 | 1.60E-10 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23838 | PF03106 | WRKY | 3.40E-25 | CL0274 | Lac | TF |
Pathway information