Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0974 ATGATGCCTAGTGTAATGACAGACTCATCGGAGAAGGACTCAGAGCCGTTCGTAGAAGTAAACCCGACCGGCCGATACGGGCGGTACGGCGAGCTTCTAGGGTCGGGGGCGGTGAAGAAAGTGTACAGAGCATTTGATCAAGAAGAAGGAATAGAGGTGGCTTGGAACCAAGTGAAGCTAAGGAGCTTTTCAAATGATCCATCGATGATTGATAGGCTTTACTCGGAGGTGACACTGTTAAGAACCCTAAAGAACAACAACATCATTGCCTTGTACGATGTGTGGCTTGACAAACTTCATGGAACCCTAAATTTCATCACTGAGGTTTGTACAAGTGGGAACCTTAGAGAGTACAGGAAGAAACATAGGCAAGTTTCTTTGAAGGCTTTGAAGAAATGGTCCAAGCAGATTCTTCAGGGTTTGCACTATTTGCATACTCATGAGCCTTGCGTTATTCATAGAGATCTCAATTGTAGCAACCTCTTTGTCAATGGCAATGTTGGCCAGGTGAAGATTGGAGACTTGGGTTTGGCAGCAACAGTGGGAAAGAATCACTCAGCTCATTCAGTGCTTGGGACACCAGAATTCATGGCACCTGAGCTATATGAGGAGCATTACACAGAGCTTGTGGACATTTATTCATTTGGAATGTGTTTGCTTGAATTGGTCACCTTGGAAATTCCCTATAGTGAATGTGACAATGTTGCCAAAATCTACAAGAAAGTCTCCTCAGGGATTAAGCCTCAAGCCCTTGGCAAGGTCAAGGACCCTGAGGTTAAGGCTTTCATTGAGAAGTGCCTTGCTCAGTACCAAGATCGGCCCTCCGCCGACGACCTCCTCCGTGACCCCTTTTTTGGAGAAATTGATGATGACGAAAACGACGACAACGATCATTAG 897 45.71 MMPSVMTDSSEKDSEPFVEVNPTGRYGRYGELLGSGAVKKVYRAFDQEEGIEVAWNQVKLRSFSNDPSMIDRLYSEVTLLRTLKNNNIIALYDVWLDKLHGTLNFITEVCTSGNLREYRKKHRQVSLKALKKWSKQILQGLHYLHTHEPCVIHRDLNCSNLFVNGNVGQVKIGDLGLAATVGKNHSAHSVLGTPEFMAPELYEEHYTELVDIYSFGMCLLELVTLEIPYSECDNVAKIYKKVSSGIKPQALGKVKDPEVKAFIEKCLAQYQDRPSADDLLRDPFFGEIDDDENDDNDH 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14935619 14937410 + Lag0018058.1 Lac5g0974 607616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0974 298 PIRSF TyrPK_CSF1-R 117 281 - -
Lac5g0974 298 PIRSF TyrPK_CSF1-R 26 130 - -
Lac5g0974 298 FunFam Probable serine/threonine-protein kinase WNK1 11 108 - -
Lac5g0974 298 CDD STKc_WNK 25 285 - -
Lac5g0974 298 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
Lac5g0974 298 FunFam probable serine/threonine-protein kinase WNK9 110 291 - -
Lac5g0974 298 Gene3D Transferase(Phosphotransferase) domain 1 110 290 - -
Lac5g0974 298 MobiDBLite consensus disorder prediction 274 298 - -
Lac5g0974 298 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g0974 298 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g0974 298 MobiDBLite consensus disorder prediction 1 20 - -
Lac5g0974 298 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 286 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Lac5g0974 298 SUPERFAMILY Protein kinase-like (PK-like) 29 290 IPR011009 -
Lac5g0974 298 MobiDBLite consensus disorder prediction 284 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0974 Lac-Chr5:14935619 Lac6g2741 Lac-Chr6:45131437 2.70E-94 dispersed
Lac9g1971 Lac-Chr9:39452696 Lac5g0974 Lac-Chr5:14935619 1.40E-128 transposed
Lac3g2189 Lac-Chr3:28432246 Lac5g0974 Lac-Chr5:14935619 9.20E-97 wgd
Lac5g0974 Lac-Chr5:14935619 Lac8g1174 Lac-Chr8:24998399 8.00E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86188 PF00069 Pkinase 1.40E-50 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0974 K08867 - csv:101221172 535.798