Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1038 ATGGCAGCTTCTGATTTATGGATAAAGGAATATAATGAAGCCTCTAAGCTTGGTGATGATATCAATGGCATGATTTCTGAAAGGAGTTCCTTTCCTGCAACTGGACCAGAAGCCCAACGTCATGCCTCTGCCATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCTTACAGTCCCTTTTGTTGAAGCTTCCTGTAAAGCAGCCGCTGTCTGAAAAAGAGATAAATCGGCGTAAAGACATGCTTGCACAAATGAAATCAAAAGTAAACCAGATGGCCTCAACACTGAACATGTCGAACTTTGCTAACCGTGACAGTTTGCTTGGGCCAGAAATGAAATCAGGAGACGTGATGAACAAAACAGTTGGACTAGACAATCAAGGACTTGTTGGTTTTCAAAGACAAATCATGAAGGAGCAAGATGAAGGTCTTGAAAAGCTGGAGGAGACTATTATAAGTACAAAACATATTGCATTGGCAGTTAATCAAGAACTCGATCTTCATACTCACCTAATTGATGACTTGGACCAAGACGTCGATGTTACAGACTCTCGATTAGCGGTAAAATTCTCACTTCCTATTCATTGTCGGCTTTAG 603 41.29 MAASDLWIKEYNEASKLGDDINGMISERSSFPATGPEAQRHASAIRRKITILGTKVDGLQSLLLKLPVKQPLSEKEINRRKDMLAQMKSKVNQMASTLNMSNFANRDSLLGPEMKSGDVMNKTVGLDNQGLVGFQRQIMKEQDEGLEKLEETIISTKHIALAVNQELDLHTHLIDDLDQDVDVTDSRLAVKFSLPIHCRL 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16893392 16894897 + Lag0018122.1 Lac5g1038 607680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1038 200 CDD SNARE_Qc 139 188 - -
Lac5g1038 200 Gene3D - 138 192 - -
Lac5g1038 200 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 136 188 IPR000727 -
Lac5g1038 200 FunFam syntaxin-51 isoform X2 138 196 - -
Lac5g1038 200 PANTHER SYNTAXIN 8 187 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lac5g1038 200 SUPERFAMILY SNARE fusion complex 127 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1436 Lac-Chr2:12263020 Lac5g1038 Lac-Chr5:16893392 2.00E-74 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1038 K08503 - csv:101223140 327.405