Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1090 ATGGACAACTATGGAAAATTATCTAGTTTGTTTGTTATCATTAAAATATGGCACTTCATTGATTTTGACTATTCCTTCAAACTTACGACTTGTACAGATCTGAAGGGTCAAAATCTGCCCATTGGTTCATTTACATTAAAGCAAATCACAACTGCAACTAATAACTTTGACCCTTCCAATAAGATAGGAGAAGGTGGTTTTGGACCTGTTTATAAGGGTATTCTTTTGAATGGTACCATGGTTGCAGTGAAGCAACTTTCTACAAAATCAAATCAAGGAAATCGTGAATTTGTGAATGAGATAGGCTTGATATCTTCTTTGAATCACCCACATCTAGTTAAGCTTTATGGATGTTGTATCGAGGCAGATCAACTTTTGCTAGTATATGAATATATGGAAAATAATAGCCTTGCTCAAGCCCTCTTCGATAAAAATCTCAACCCAAAAATATCTGACTTTGGTTTGGCCAAGCTTGATGAAGAAGAAAATACTCACATAAACACTCGAATTGCTGGAACATTTGGATATATGGCCCCAGAATATGCAACACGAGGCTACTTAACCGATAAAGCTGATGTTTATAGCTTTGGTATCGTGGCATTAGAAATAGTTAGTGGAAGGAGCAACACTATGTACCGAGGAAAGGATAAGTGTCTTTATCTCCTTGATTGGGCACTTGTATTGAAAGAGAGAGGAAGTTTAATGGAGCTAGTGGATCCAAAGTTGGGCTCGAGCTTCGACCAAGAAGAAGCAATAGCAATGATCAAAATTGCTTTCTTGTGCACGAATGTCTCTCCCTCAGCAAGACCTACCATGTCCTCCGTGGTGAGCATGCTGGAAGGTAAAGTTGCTGTGAAGGAGCTGGTTCCAGAGAATGCAGATGCAGATGGCAATGACATGGTCGAAGAGATGAGCGCAATGTGGGCTCTTATTCAGCAGCAGGAGGAAATAACGGATGACGAGCACAAGACAAAAACTGGATCTACCAGTTCTTCGACATTGAACATCAATTAA 1014 39.55 MDNYGKLSSLFVIIKIWHFIDFDYSFKLTTCTDLKGQNLPIGSFTLKQITTATNNFDPSNKIGEGGFGPVYKGILLNGTMVAVKQLSTKSNQGNREFVNEIGLISSLNHPHLVKLYGCCIEADQLLLVYEYMENNSLAQALFDKNLNPKISDFGLAKLDEEENTHINTRIAGTFGYMAPEYATRGYLTDKADVYSFGIVALEIVSGRSNTMYRGKDKCLYLLDWALVLKERGSLMELVDPKLGSSFDQEEAIAMIKIAFLCTNVSPSARPTMSSVVSMLEGKVAVKELVPENADADGNDMVEEMSAMWALIQQQEEITDDEHKTKTGSTSSSTLNIN 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18037420 18039285 - Lag0018174.1 Lac5g1090 607732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1090 337 Pfam Protein tyrosine and serine/threonine kinase 60 143 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g1090 337 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 141 300 IPR051824 -
Lac5g1090 337 MobiDBLite consensus disorder prediction 316 337 - -
Lac5g1090 337 Gene3D Phosphorylase Kinase; domain 1 23 131 - -
Lac5g1090 337 ProSiteProfiles Protein kinase domain profile. 56 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g1090 337 SUPERFAMILY Protein kinase-like (PK-like) 39 284 IPR011009 -
Lac5g1090 337 Gene3D Transferase(Phosphotransferase) domain 1 133 305 - -
Lac5g1090 337 SMART serkin_6 56 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g1090 337 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 26 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g2648 Lac-Chr2:40772503 Lac5g1090 Lac-Chr5:18037420 2.40E-141 dispersed
Lac5g1090 Lac-Chr5:18037420 Lac5g2414 Lac-Chr5:42790269 2.10E-103 dispersed
Lac12g1509 Lac-Chr12:28050030 Lac5g1090 Lac-Chr5:18037420 2.60E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86189 PF07714 PK_Tyr_Ser-Thr 8.20E-18 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1090 - - - 0.0