Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1152 ATGAGGAGAGGGAGAGGAACGGCGGCGGCGGTGGAGACGGCGGCGCGTGAGCCTGTACCAACCGGATCGGAGCGGAGATACAGAGGAGTTCGTAAAAGGCCATGGGGGAGATTCGCGGCGGAGATCAGAGACCCTTGGAAGAAGACCAGAGTTTGGCTCGGCACCTTCGACTCCGCCGAGGACGCCGCCCGTGCTTACGACTTCGCCGCCAGAAAACTCCGCGGCCCCAAAGCCAAAACCAATTTCCCCCTCCCCAATCCGACGTCGTTTTTCGACTACCCCCCTTACCCTCACACCGTCAACGCTCCAGATCCCTTCCCCGATCACCGATTCGAGATTAATCCTCAGAGACCCACTTCCAGTAGCCACAGCTCCACCGTCGAGTCCTTCAGCGGGCCCCGCCCGCCCTCTGCCGCCGCGCCCATGGCCGTCGCTACTAGCACTTCCGCCTCCCGCCGATTCTCTCGCAGGCCGCCGCTCGTCCCTGAGGATTGCCATAGCGACTGCGATTCCTCGTCCTCGGTCATCGACGACGGCGACATCGCTTCCTCGTCGATGATTCGTCGGAAACCCCCTCTGCCCTTCGATCTTAACATTCCGCCGTCGGATCATCTTGATTTTTCCGCCGATGATCTTCGATGTACTGCCCTCTGCCTCTGA 660 61.36 MRRGRGTAAAVETAAREPVPTGSERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDFAARKLRGPKAKTNFPLPNPTSFFDYPPYPHTVNAPDPFPDHRFEINPQRPTSSSHSSTVESFSGPRPPSAAAPMAVATSTSASRRFSRRPPLVPEDCHSDCDSSSSVIDDGDIASSSMIRRKPPLPFDLNIPPSDHLDFSADDLRCTALCL 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19954115 19954774 + Lag0018236.1 Lac5g1152 607794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1152 219 SMART rav1_2 26 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g1152 219 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g1152 219 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g1152 219 Pfam AP2 domain 26 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g1152 219 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677(InterPro)
Lac5g1152 219 CDD AP2 26 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g1152 219 MobiDBLite consensus disorder prediction 1 27 - -
Lac5g1152 219 FunFam Ethylene-responsive transcription factor 2 25 84 - -
Lac5g1152 219 MobiDBLite consensus disorder prediction 101 195 - -
Lac5g1152 219 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g1152 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 178 - -
Lac5g1152 219 MobiDBLite consensus disorder prediction 114 132 - -
Lac5g1152 219 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0904 Lac-Chr10:7208330 Lac5g1152 Lac-Chr5:19954115 2.20E-24 dispersed
Lac12g0822 Lac-Chr12:8546830 Lac5g1152 Lac-Chr5:19954115 2.20E-50 dispersed
Lac2g1239 Lac-Chr2:10112252 Lac5g1152 Lac-Chr5:19954115 1.50E-24 dispersed
Lac5g1152 Lac-Chr5:19954115 Lac9g2224 Lac-Chr9:41684685 8.40E-53 dispersed
Lac11g1394 Lac-Chr11:23016653 Lac5g1152 Lac-Chr5:19954115 2.10E-12 wgd
Lac4g0718 Lac-Chr4:18010968 Lac5g1152 Lac-Chr5:19954115 1.50E-10 wgd
Lac5g1152 Lac-Chr5:19954115 Lac7g1524 Lac-Chr7:16776947 2.30E-18 wgd
Lac5g1152 Lac-Chr5:19954115 Lac8g1361 Lac-Chr8:29834300 8.80E-11 wgd
Lac5g1152 Lac-Chr5:19954115 Lac9g0397 Lac-Chr9:7276078 2.70E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23839 PF00847 AP2 5.50E-13 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1152 K09286 - csv:101219993 283.878