Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1340 ATGACGCACGAGGAATCCCTTTTTCCACATCGAGAATATATTATCCAGATAGCCATACAACTCAATTTCATCGTGGCCGTTCATATTCTCAACAACACTCCATCCCCACCGTCCATTCTCTCCACCGTTCGCACCAAACACCACTCTATATATACTGCACTGACCCACTCCGTTCTCTTCACGCTTTCCATTCGCATTCTGCTTCGACTTCGCCTTCGCCTTCAGATTTTGGGTGCCTTCAGTTACCACCAAGCAAATTACATGGTTGATCTAGACGTCCAGATTCCAACTGCTTTTGATCCCTTTGCCGACGCCAAGGACTCGGATGCCCCGGGAAGCAAAGAGTACGTCCATATAAGGGTCCAACAGAGGAATGGGAAGAAGTGTCTGACAACAGTTCAAGGGCTTAAGAAGGAGTTCAGCTATGATAAGATCCTCAAGGACCTGAAGAAGGACTTCTGTTGCAATGGGAATGTTGTTCAGGACAAAGAGATGGGGAAGATAATCCAACTCCAAGGCGATCAGCGCAAGAACGTCTCTCAGTTCCTCGTTCAGGCCGGCCTCGTTAAGAAGGATCAAATCAAGATACATGGTTTTTGA 600 47.17 MTHEESLFPHREYIIQIAIQLNFIVAVHILNNTPSPPSILSTVRTKHHSIYTALTHSVLFTLSIRILLRLRLRLQILGAFSYHQANYMVDLDVQIPTAFDPFADAKDSDAPGSKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILKDLKKDFCCNGNVVQDKEMGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26557174 26558869 - Lag0018424.1 Lac5g1340 607982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1340 199 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 88 199 - GO:0003723(PANTHER)
Lac5g1340 199 NCBIfam translation initiation factor SUI1 92 199 IPR005874 GO:0003743(InterPro)
Lac5g1340 199 Gene3D - 78 199 - -
Lac5g1340 199 CDD eIF1_SUI1 115 198 IPR005874 GO:0003743(InterPro)
Lac5g1340 199 Pfam Translation initiation factor SUI1 114 188 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Lac5g1340 199 ProSiteProfiles Translation initiation factor SUI1 family profile. 117 187 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Lac5g1340 199 FunFam Eukaryotic translation initiation factor SUI1 89 199 - -
Lac5g1340 199 SUPERFAMILY eIF1-like 86 199 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0614 Lac-Chr12:6537469 Lac5g1340 Lac-Chr5:26557174 7.80E-41 dispersed
Lac12g0615 Lac-Chr12:6542266 Lac5g1340 Lac-Chr5:26557174 8.70E-46 dispersed
Lac2g1401 Lac-Chr2:11858863 Lac5g1340 Lac-Chr5:26557174 2.70E-55 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1340 K03113 - csv:101214921 225.713