Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1345 ATGACCCATTTTCTTGAACCCAAATTCCACCAAACCCCTTTCCCATCTCTCCGCTGCAGCCCCAAATCTCCACCGCCCATTTCAATCCGATGCGGCGGCGCTGCCCGCGAGCTCCGATCCCGATTAGACTCCATTAAAAACACCCAAAAGCTCACCGAAGCCATGAAGCTCGTCGCCGCCGCCAAGGTCCGGCGAGCCCAAGAAGCCGTGATCAACAGCCGCCCCTTCTCCCAATCCCTCGCCCAATTTCTCCATTTCATCACCCAACAGATCCAACGAGACGACATAGATTTCCCCTTTCTAAACCTCAGACCCGTCAGAAAAGTCGCCGTCGTCGTCTTCACCGGCGACCGAGGCCTCTGCGGGGGGTTCAACTCTTCGGTGATCCGAAAGGCCGAGACCCGATTGGCCGAATTGAAAGATCTCGATCTGGGTCACACCCTAATCAGCGTCGGCAAAAAGGGCAACTCGCATTTCCGCCGCCGGCCCGATGTTCAAGTCGATCGGTTCATCAGCGGCTGCGGCGGCGGTTCGTTACCCACTGCAAAAGAAGCTCAAGCCATTGCAGACATCGTGTTTTCTCTGTTCATCAGCGAAGAAGTCGACAAAGTGGAACTGATTTACACGAAATTCGTTTCGTTGCTGAAATCCGAGCCTGTGGTTGAGGCTTTGCTGCCATTGACGGGTGAAGAGGAAGCCATGGGAGATGGGGGGTTTAGATTGACGACAAAGGAGGGGAAATTGAAGGTGGAGAGAGAGGGGAGAGTGGGGAATCTAGGGGAAATTTCGCCATTGTTGGAGTTTGAGCAAGACCCAGTTCAGATTTTGGATGGGATGATGGCTCTGTATTTGAACAGTCAGATTTTGAGGGCTTTGCAGGAATCTATGGCGAGTGAGGTTGCGGCGAGGATGAATGCCATGACTAATGCTTCTGAGAATGCAATGGAGTTGAAGAAATCTGTTTCGGTTGCTTATAATCGAGAGAGACAGGCCAAGATTACTGGGGAGATTCTGGAGATTGTTGCTGGAACTGAGGCTCTTGAGAGATTTTGA 1053 52.33 MTHFLEPKFHQTPFPSLRCSPKSPPPISIRCGGAARELRSRLDSIKNTQKLTEAMKLVAAAKVRRAQEAVINSRPFSQSLAQFLHFITQQIQRDDIDFPFLNLRPVRKVAVVVFTGDRGLCGGFNSSVIRKAETRLAELKDLDLGHTLISVGKKGNSHFRRRPDVQVDRFISGCGGGSLPTAKEAQAIADIVFSLFISEEVDKVELIYTKFVSLLKSEPVVEALLPLTGEEEAMGDGGFRLTTKEGKLKVEREGRVGNLGEISPLLEFEQDPVQILDGMMALYLNSQILRALQESMASEVAARMNAMTNASENAMELKKSVSVAYNRERQAKITGEILEIVAGTEALERF 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26891965 26893017 + Lag0018429.1 Lac5g1345 607987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1345 350 Hamap ATP synthase gamma chain [atpG]. 32 347 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lac5g1345 350 FunFam ATP synthase gamma chain, chloroplastic 33 100 - -
Lac5g1345 350 FunFam ATP synthase gamma chain 99 228 - -
Lac5g1345 350 Gene3D - 99 228 - -
Lac5g1345 350 Pfam ATP synthase 35 347 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lac5g1345 350 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 35 347 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lac5g1345 350 PRINTS ATP synthase gamma subunit signature 294 313 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lac5g1345 350 PRINTS ATP synthase gamma subunit signature 325 346 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lac5g1345 350 PRINTS ATP synthase gamma subunit signature 106 125 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lac5g1345 350 PRINTS ATP synthase gamma subunit signature 202 219 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lac5g1345 350 Gene3D ATP synthase, gamma subunit, helix hairpin domain 252 347 - -
Lac5g1345 350 Gene3D ATP synthase, gamma subunit, helix hairpin domain 33 98 - -
Lac5g1345 350 CDD F1-ATPase_gamma 36 343 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lac5g1345 350 FunFam ATP synthase gamma chain, chloroplastic 244 347 - -
Lac5g1345 350 NCBIfam ATP synthase F1 subunit gamma 35 347 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lac5g1345 350 PANTHER ATP SYNTHASE GAMMA CHAIN 24 347 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(PANTHER)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0145 Lac-Chr10:1108388 Lac5g1345 Lac-Chr5:26891965 7.10E-24 dispersed
Lac1g3212 Lac-Chr1:52151623 Lac5g1345 Lac-Chr5:26891965 1.40E-105 dispersed
Lac5g1345 Lac-Chr5:26891965 Lac10g0684 Lac-Chr10:5275958 5.00E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1345 K02115 - csv:101214682 592.423