Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1402 ATGTCAGAGGAGAAAGCGGCCAGCAGTAGGAAGTCTTTGAAAAAGAGCATTAAGGAGTATCAGGACACCAAAACTTTAGCCTCATTTGCCAACATTTCCTTTAAATCTGATAGCAGTCGGCGAAGGTACATAACTGAGGAGATAAAGAAGTTAGGGAAAGGAAACATCTCAGCTCAAATATTTACATTTAATGAGCTAAGTACTGCAACGAATAACTTCAACCACGACAATCTGTTGGGGGAAGGCGGTTTTGGAAGGGTTTACAAAGGCATCTTTGAAAACACAAAACAAGTAACGGCCGTGAAGCAACTCGACCGAAATGGATTTCAAGGAAACAGAGAATTCCTTGTAGAGGTTTTGATGTTGAGCCTTCTTCACCATCCGAATCTTGTGAATTTGGTTGGGTATTGTGCTGATGGGGATCAAAGGATTTTGGTTTATGAGTACATGGCTAAAGGTTCCTTGGAGGATCATCTGCTCGATATAGTGTCAGATAAGCCGCCTCTGGACTGGAAGACAAGGATGAAAATTGCTGAAGGAGCAGCAAAAGGACTTGAATACTTACACGAAACCGCCAATCCTCCCGTGATATACCGCGATTTCAAAGCTTCAAACATATTGTTGGATGAGGAATTCAATCCAAAGCTCTCTGATTTTGGTCTTGCAAAGTTAGGTCCTACTGGAGATAAATCTCATGTTTCCACTAGAGTGATGGGAACCTATGGTTACTGTGCTCCTGAATATGCACTTACAGGACAATTGACGACGAAATCAGATGTCTACAGTTTCGGCGTCGTGTTTCTGGAGATAATAACAGGAAGAAGAGTTATAGACAATGCAAGACCAACAGCAGAACAAAATTTAATTACTTGGGCTCAACCACTATTCAAAGACAGAAGGAAATTTACACTAATGGCAGATCCAAAGCTAGAAGGAAGCTACCCAGTGAAGGCTCTATATCAAGCTCTAGCAGTGGCAGCCATGTGTTTACAGGAGGAAGCAAATACACGGCCATTGATCAGCGATGTGGTTACGGCTCTTGAATACTTAGCAGCAAACAAAGATATCGAGGGAGACGAAGATGACGAATCAGATTCGGGATCGGTACCGGGATCGGGATCGGGTTCAGGTTCGGCTTCTCCAGATAGAAGTAGTAAGGATGGAGATAAAAATGTTGATGTTGAGAGTGATGGGAGATGA 1200 42.75 MSEEKAASSRKSLKKSIKEYQDTKTLASFANISFKSDSSRRRYITEEIKKLGKGNISAQIFTFNELSTATNNFNHDNLLGEGGFGRVYKGIFENTKQVTAVKQLDRNGFQGNREFLVEVLMLSLLHHPNLVNLVGYCADGDQRILVYEYMAKGSLEDHLLDIVSDKPPLDWKTRMKIAEGAAKGLEYLHETANPPVIYRDFKASNILLDEEFNPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEIITGRRVIDNARPTAEQNLITWAQPLFKDRRKFTLMADPKLEGSYPVKALYQALAVAAMCLQEEANTRPLISDVVTALEYLAANKDIEGDEDDESDSGSVPGSGSGSGSASPDRSSKDGDKNVDVESDGR 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28145867 28148905 + Lag0018486.1 Lac5g1402 608044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1402 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g1402 399 MobiDBLite consensus disorder prediction 367 382 - -
Lac5g1402 399 PANTHER OS07G0668900 PROTEIN 25 360 - -
Lac5g1402 399 FunFam Serine/threonine-protein kinase CDL1-like 44 149 - -
Lac5g1402 399 ProSiteProfiles Protein kinase domain profile. 73 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g1402 399 Pfam Protein kinase domain 75 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g1402 399 Gene3D Phosphorylase Kinase; domain 1 32 149 - -
Lac5g1402 399 MobiDBLite consensus disorder prediction 383 399 - -
Lac5g1402 399 Gene3D Transferase(Phosphotransferase) domain 1 150 369 - -
Lac5g1402 399 SUPERFAMILY Protein kinase-like (PK-like) 57 345 IPR011009 -
Lac5g1402 399 FunFam Serine/threonine-protein kinase PBS1 150 365 - -
Lac5g1402 399 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524(InterPro)
Lac5g1402 399 CDD STKc_IRAK 79 348 - -
Lac5g1402 399 MobiDBLite consensus disorder prediction 355 399 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g2138 Lac-Chr2:26456278 Lac5g1402 Lac-Chr5:28145867 3.80E-158 dispersed
Lac5g1402 Lac-Chr5:28145867 Lac7g0849 Lac-Chr7:6877120 2.90E-136 dispersed
Lac6g0611 Lac-Chr6:5187206 Lac5g1402 Lac-Chr5:28145867 1.20E-69 dispersed
Lac3g2607 Lac-Chr3:39996838 Lac5g1402 Lac-Chr5:28145867 1.60E-79 wgd
Lac5g1402 Lac-Chr5:28145867 Lac8g1144 Lac-Chr8:24508255 2.00E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86191 PF00069 Pkinase 6.70E-47 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1402 - - - 0.0