Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1426 ATGATCTCTTCTTTGAGTCAATCTGCAAATACCATTAATGGGTCGGACATTGTTCTCCGGCGGAGGTCTCTGCCGCCAATCCGGCGGTTCTCGTGTCCACCGCCATTGCCGGTGCAAAAATCCCAAGGGTCCGTTGTGTGTATGAAAAATGCTCTTCATATCTCCTCGGTTTCCAATTTTGGGCCACTGGGAACTCGGAAGTGTGATTTGATTACGAGCAAAGCTTACGAGGCTGACCGATCGCAGCCGATTGAGTCGAACATTGAACTGACGATGGCCGAAGCGCCGTCGGAGGCGGCGAAGAAGGTGAAGATCGGACTGTATTTCGCTCTCTGGTGGGGTTTGAACGTCGTGTTCAACATTTATAACAAGAAGGTTTTGAATGCGTTTCCATATCCATGGCTGACCTCTACACTTTCTCTGGCTGTTGGCTCTCTCATCATGTTAGTCTCTTGGATGACGAGGATCGCTGAGGCACCCAAGACTGATTTCGATTTTTGGAAGTCTTTGCTCCCAGTTGCTGTGGCCCATACGATTGGACATGTAGCGGCAACAGTGAGCATGTCAAAGGTTGCCGTCTCATTCACTCATATCATCAAGAGTGGTGAGCCTGCATTTAGCGTATTGGTTTCAAGGTTCCTATTGGGTGAGACTTTTCCTGTTCCTGTCTACCTCTCGCTTCTCCCGATCATCGGTGGCTGTGCACTTGCTGCCGTGACTGAGCTCAACTTCAACATGACAGGTTTCATGGGAGCCATGATATCAAACTTGGCATTTGTCTTCAGAAACATATTTTCCAAGAAAGGCATGAAGGGGAAGTCCGTCAGTGGAATGAACTACTACGCCTGTCTGTCCATATTGTCCCTTTTGATTCTTACCCCGTTCGCCATCGCTGTCGAAGGACCGCAGATGTGGGCTGCTGGTTGGAAAACAGCTCTCTCTGACATAGGACCTAATTTCGTATGGTGGGTAGCAGCACAGAGTGTGTTCTATCATCTCTACAACCAAGTATCCTACATGTCACTGGACGAGATTTCTCCCTTGACATTTAGCATTGGTAACACCATGAAACGTATATCTGTCATAGTTTCTGCCATCATCATCTTCCGCACACCTGTGCAGCCCGTCAACGCTCTTGGAGCTGCGATCGCCGTCCTCGGGACCTTCTTGTATTCCCAGGCAAAACAATGA 1191 48.87 MISSLSQSANTINGSDIVLRRRSLPPIRRFSCPPPLPVQKSQGSVVCMKNALHISSVSNFGPLGTRKCDLITSKAYEADRSQPIESNIELTMAEAPSEAAKKVKIGLYFALWWGLNVVFNIYNKKVLNAFPYPWLTSTLSLAVGSLIMLVSWMTRIAEAPKTDFDFWKSLLPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPVPVYLSLLPIIGGCALAAVTELNFNMTGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSILSLLILTPFAIAVEGPQMWAAGWKTALSDIGPNFVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSAIIIFRTPVQPVNALGAAIAVLGTFLYSQAKQ 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28551689 28555016 - Lag0018510.1 Lac5g1426 608068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1426 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 145 239 - -
Lac5g1426 396 PANTHER SOLUTE CARRIER FAMILY 35 99 395 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
Lac5g1426 396 Pfam Triose-phosphate Transporter family 104 392 IPR004853 -
Lac5g1426 396 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 104 395 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3227 Lac-Chr1:52232091 Lac5g1426 Lac-Chr5:28551689 2.70E-155 dispersed
Lac1g3358 Lac-Chr1:53222348 Lac5g1426 Lac-Chr5:28551689 5.20E-62 dispersed
Lac5g1426 Lac-Chr5:28551689 Lac7g0352 Lac-Chr7:2718983 5.50E-87 dispersed
Lac5g1426 Lac-Chr5:28551689 Lac2g1379 Lac-Chr2:11655710 1.70E-181 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1426 K15283 - csv:101216838 715.301