Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1493 ATGGTATCCCCCGAAGCCCCCAACTGGCTCTTTGATTATGCTTTAATGGACGATATTCCTGTTGCCGATGCCAATTTCTCTGCACCCACTACCGGTTTCTCTTGGTCCATTCCACCCTTGAACGCCTCCTCCAATGTCAGCGCGGAAATTGAAGGATCGATGTTGGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGGTCAGAACCGAATCAAGTTGTGCATCTAGCTCAAAAGCATGTAGGGAGAAGCTGCGGAGGGACAGACTAAATGACAAGTTTCTGGAATTGGGTGCTATTCTGGAGCCTGGAAAGCCACCAAAGACCGATAAGGCTGCCATTTTGATCGATGCTGTTCGAATGGTTTCTCAGTTACGTGGTGAAGCCCAGATGTTGAAGGACTCAAATACAAGTCTATCAGAGAAGATTAAAGAGTTGAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAGCAGAGGTTAAAATTGGAGAAAGAGAAGTTGGAACAGCAACTAAAAGCCATGAATTCACAACCTGGCTTCTTGCCTCCAGCCATCCCTGCAACTTTTGCTGCTCAAGGCCAAGCACCTGGAAACAAGTTGGTTCCTTTCATTGGCTACCCAGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCAGTCGACACCTCGCAAGATCACGTGCTCCGCCCTCCTGTTGCTTAA 705 48.65 MVSPEAPNWLFDYALMDDIPVADANFSAPTTGFSWSIPPLNASSNVSAEIEGSMLESDGLKEPGSKKRVRTESSCASSSKACREKLRRDRLNDKFLELGAILEPGKPPKTDKAAILIDAVRMVSQLRGEAQMLKDSNTSLSEKIKELKAEKNELRDEKQRLKLEKEKLEQQLKAMNSQPGFLPPAIPATFAAQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29885775 29888988 + Lag0018577.1 Lac5g1493 608135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1493 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
Lac5g1493 234 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
Lac5g1493 234 MobiDBLite consensus disorder prediction 54 77 - -
Lac5g1493 234 Coils Coil 130 178 - -
Lac5g1493 234 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
Lac5g1493 234 CDD bHLH_AtILR3_like 83 155 - -
Lac5g1493 234 PANTHER BHLH TRANSCRIPTION FACTOR 8 234 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Lac5g1493 234 FunFam Transcription factor bHLH34 66 124 - -
Lac5g1493 234 Gene3D - 77 152 IPR036638 GO:0046983(InterPro)
Lac5g1493 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0758 Lac-Chr10:5859681 Lac5g1493 Lac-Chr5:29885775 1.20E-54 dispersed
Lac5g1493 Lac-Chr5:29885775 Lac9g2079 Lac-Chr9:40394046 8.40E-59 dispersed
Lac5g1493 Lac-Chr5:29885775 Lac2g1358 Lac-Chr2:11426874 2.60E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23843 PF00010 HLH 2.10E-10 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1493 - - - 0.0