Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1540 ATGGCGGAGGAGTTTCAAAGCACTGGAAACTGGTGGGATGCTTCTAGAAGCCGCTACGACGCCGGAATATCCCCTTCCTCATCCTCCGCCGCCGACCCCAATTTGCACATCATGGGCTTGGGCCTCGATTGGAACCAACCCCTCTTTCGGGGCGGCGGAGAGAAGGCGGCGGAGAGCAGTTTCCGGTCGATGCTGCAGGCGGATAACATGAATTTAAATATGCAAGAAACAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACCACAACAACAACAACAGCAGCAGCAGCAGATTCAATGGATGAGATCGGAGAAGCTTTATTCAGGTTCAGGGGACTCCACCGAATTCAAACCCATCAACAACAACAACAACAACAGAGGCTTCTCCTTAGACCATCATCACCACCCCTTCACCCCTTCTCACTACACCTCCGCCGCCGACACTCTATACGCAAATTCCGCAACATTATTACAAGGCTTATTAGCCGGCGGCGAACAGCAACAGCAACCTAATTCCGCGGGTATGAACTTCCCAGCTTACAGTGCCCATTTCGGGATGAACTCCGGCGAGCTAATGACGGCGCCCCACAGTCAGTCGTTGCAGTTTTCTAACAACACGGCGTTCTGGAACGCGTCGGATATGAAAGACGTGAGGCCGAGCTTTTTTCCGCCGTCGTACAACGCGGCTGCAGCTTTCGCCGAGAAACCAAAGAATATATCGGAGGTTGGTGATTCGGGAACAGTGGTTAAAAAAAGTGGGAATGTGGATCATAATCAACAATCCGGTGGTAGTGCCGCTGCTTCTGCCAAAAGGCCTCGAAATGAAACTCCTTCCCCATTGCCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCGCTCCAACAACTCGTTTCACCTTTCGGAAAGACTGATACAGCTTCAGTGCTGTCTGAAGCAATTGAATACATAAAGTTCCTCCATGAACAAGTCACTGTTTTGAGCACTCCATATTTGAAGACTGGAGCTGCACTACAACAACAACATCACCAGCAGAGCTGCGAGAAATCAAAGGATGGAGAAGGAGGAAAACAAGATCTAAGAAGCCGAGGGCTTTGTTTAGTTCCAGTTTCAAGTACATTTCCAGTCACTCACGAAACCACAGTTGATTTTTGGACTCCAACCTTCGGAGGAACCTTCAGATAA 1200 50.17 MAEEFQSTGNWWDASRSRYDAGISPSSSSAADPNLHIMGLGLDWNQPLFRGGGEKAAESSFRSMLQADNMNLNMQETGGGGGGGGGGGGPQQQQQQQQQIQWMRSEKLYSGSGDSTEFKPINNNNNNRGFSLDHHHHPFTPSHYTSAADTLYANSATLLQGLLAGGEQQQQPNSAGMNFPAYSAHFGMNSGELMTAPHSQSLQFSNNTAFWNASDMKDVRPSFFPPSYNAAAAFAEKPKNISEVGDSGTVVKKSGNVDHNQQSGGSAAASAKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYLKTGAALQQQHHQQSCEKSKDGEGGKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTFR 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31098152 31100699 - Lag0018624.1 Lac5g1540 608182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1540 399 MobiDBLite consensus disorder prediction 246 283 - -
Lac5g1540 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 276 325 IPR011598 GO:0046983(InterPro)
Lac5g1540 399 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 78 378 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lac5g1540 399 FunFam Transcription factor bHLH123 family 286 350 - -
Lac5g1540 399 MobiDBLite consensus disorder prediction 247 269 - -
Lac5g1540 399 CDD bHLH_AtbHLH_like 282 333 IPR045239 -
Lac5g1540 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 286 342 IPR036638 GO:0046983(InterPro)
Lac5g1540 399 MobiDBLite consensus disorder prediction 88 129 - -
Lac5g1540 399 Gene3D - 286 355 IPR036638 GO:0046983(InterPro)
Lac5g1540 399 SMART finulus 287 331 IPR011598 GO:0046983(InterPro)
Lac5g1540 399 MobiDBLite consensus disorder prediction 72 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0771 Lac-Chr10:6067389 Lac5g1540 Lac-Chr5:31098152 1.90E-43 dispersed
Lac12g0200 Lac-Chr12:2180337 Lac5g1540 Lac-Chr5:31098152 3.40E-26 dispersed
Lac1g3264 Lac-Chr1:52487895 Lac5g1540 Lac-Chr5:31098152 3.50E-53 dispersed
Lac3g0925 Lac-Chr3:7464658 Lac5g1540 Lac-Chr5:31098152 1.30E-29 dispersed
Lac4g2895 Lac-Chr4:47402548 Lac5g1540 Lac-Chr5:31098152 3.80E-24 dispersed
Lac5g1540 Lac-Chr5:31098152 Lac6g0439 Lac-Chr6:3578618 9.00E-21 dispersed
Lac1g0617 Lac-Chr1:14740161 Lac5g1540 Lac-Chr5:31098152 7.30E-32 transposed
Lac7g1318 Lac-Chr7:12822545 Lac5g1540 Lac-Chr5:31098152 5.60E-24 transposed
Lac13g1931 Lac-Chr13:25367394 Lac5g1540 Lac-Chr5:31098152 2.60E-27 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1540 - - - 0.0