Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1618 ATGCCAACAGTTTGGTTGTCCTTGAAGAAATCTTTGCACTGCAAATCAGAGCCATCAGAAGTTCATGACCCCAAAAGCAGAAGGAATTTGGGAGCAATTTTGACAAGAAAAACAGGGGGAGGAGGAAGATCAGGTTGTTCAAGGTCCATTGCAAATCTCAAAGATGTCATCCATGGCGGCAGCAAGAGGCATTTGGATAAGCCCCCTAGCTGCAGCCCAAGATCCATTGGCAGCAGTGAGTTTCTCAACCCCATAACCCACGAAGTCATTCTCAGCAACTCAAGGTGCGAGCTCAAAATCACCGGTTTCCACGGCGGTTTCAGCCAAGATGTGCCTGCCGCCGCCGACCCTCACGGCGGCGCTAGTGGCGGTTCCACTTTTGTGGGGACTCTGACACCGGGCACGCCGGGCCCCGGTGGCCACCCCACAATGCACTACTTTAATCCTTCGTTTAGGTCATCTTCCAGAAAGTTCCCTTTTAGAGAGGGATTTGGAAGCTCTAATAAATCTGGCGGCGGCGGCGGTAGTGGTGGAGTTCATTCGAGCAACAGAATCTCTTTGGAAACAGAGATTGGTGGGAATGGGTCTTCTTCTATGGTTACTTGTCATAAATGTGGAGAGCAGTTCAACAAATGGGATGCTGCTGAAGCACATCATCTTTCTAAACATGCTGTGACTGAGCTTGTGGAAGGAGATTCATCAAGGAAAATTGTGGAGATCATATGCAGAACAAGCTGGTTGAAGTCTGAGAATCAATCTGGTAGAATAGAAAGAGTCCTGAAAGTTCACAATATGCAGCGAACACTGGCCCGGTTCGAGGAGTATCGCGAGACGGTTAAGATCAAAGCCAGCAAACTCCCAAAGAAGCATCCTCGGTGCCTCGCTGATGGAAACGAGCTCCTGCGATTCTATGGCACGACAGTTGCGTGCTCGCTCGGCCTGAATGGCTCCTCCAGCCTCTGCATATCAGAGAAATGCTGCGTCTGCAGGATCATACGTAACGGGTTCTCAGCAAAGACAGAGATGAAAGAAGGGATAGGCGTCTTCACAACTTCCACGAGTGCGAGAGCGTTCAGCTCGATCGATGAGTCGGGAGGGGATGAGACGATGACGAGGAAGGCGATGATAGTTTGCAGGGTGATTGCTGGGAGAGTTCACAGGCCATTGGAGAACATTCAAGAAATGGCTGGGCAGACAGGGTTTGATTCATTGGCAGGGAGAGTTGGGTTGCATTCAAACATAGAAGAGCTTTATTTGCTGAATCCTAGAGCTTTGCTTCCATGTTTTGTGGTAATTTGCAAACCATGA 1308 49.54 MPTVWLSLKKSLHCKSEPSEVHDPKSRRNLGAILTRKTGGGGRSGCSRSIANLKDVIHGGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGFHGGFSQDVPAAADPHGGASGGSTFVGTLTPGTPGPGGHPTMHYFNPSFRSSSRKFPFREGFGSSNKSGGGGGSGGVHSSNRISLETEIGGNGSSSMVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQSGRIERVLKVHNMQRTLARFEEYRETVKIKASKLPKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCISEKCCVCRIIRNGFSAKTEMKEGIGVFTTSTSARAFSSIDESGGDETMTRKAMIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGRVGLHSNIEELYLLNPRALLPCFVVICKP 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32920284 32922054 - Lag0018702.1 Lac5g1618 608260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1618 435 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 434 - -
Lac5g1618 435 ProSitePatterns Zinc finger C2H2 type domain signature. 202 223 IPR013087 -
Lac5g1618 435 MobiDBLite consensus disorder prediction 159 183 - -
Lac5g1618 435 SUPERFAMILY ADP-ribosylation 225 434 - -
Lac5g1618 435 MobiDBLite consensus disorder prediction 169 183 - -
Lac5g1618 435 Gene3D - 225 434 - -
Lac5g1618 435 MobiDBLite consensus disorder prediction 116 139 - -
Lac5g1618 435 FunFam C2H2-like zinc finger protein 224 434 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3260 Lac-Chr1:52455436 Lac5g1618 Lac-Chr5:32920284 1.20E-67 dispersed
Lac2g1352 Lac-Chr2:11369585 Lac5g1618 Lac-Chr5:32920284 1.10E-143 dispersed
Lac5g1618 Lac-Chr5:32920284 Lac8g1882 Lac-Chr8:37064246 1.80E-62 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23844 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1618 - - - 0.0