Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1633 ATGTATGCGCGCGATTCAGTCCACGTCCGAATTGTTCACACCCAGATCTTGACGTCCCTCTCGTCGGATTGTTCTAGATCTCACCACGCATGCCCAGATCTCGTCATGAGTTCAAATGCACGCCCACATCGAAGACCCATTGCCAGTGACGCCATTGAACACAACCTTCTAACAGGGTCTGTAGCTGCCATTGATTCCTTAACTTCTCAAAATCCATTTCTCAGCGACGGGCTTACTTTGCTCTCCAAAAATGGAGACTTCGAATTGGGTTTCTTCAGTCCTGGCCTTCCCAGTAACCGTTACTTGGGAATCTGGTTCAAGAATCGACGAGCCCCAACCTCTGTTTGGGTTGCAAACAGAGAAAACCCCATTAACGACTCGTCTGGCGTGTTGGTGATGAGCGTTAGTACAGGAAATCTTACACTCTATAGCCACAATAACACTGTCGTTGTTTGGTCTGCCCGGTTACTGAGAAAAGTCCCCAATGGGGTGCTGCAGCTATTGGACACTGGAAATCTTGTGCTGAGAGATGGGGAAGATGCAAATCCCCAAAACTATTCCTGGCAAAGCTTTGATTACCCAACCGACACTCTCTTGCCTGGAATGAAGCTAGGTTGGGACTTGAGAAATAAGATTGATAGAAGATTGTCTGCTTGGAAAAATCTCAATGACCCATCTCCTGGAAGCCTCAGTTGGAGGATGGAGCTTCATGAATATCCTGAGACTGTCATGTGGATTGGTTCCAAAGAATTCTTCAGGCATGGCCCATGGAATGGTGTGAGAATCTCCAGTTGGCCTATAGGCTTAGCGCCAAACTTGGTACTCCACTTTGTTTCCAATGAGGATGAGGTTTACTACCAATACACTGTGATAGATGAGTCTTATACAGTGATGCTGGTGTTGAACCAATCCATCAACGTGCGCACGGTGTACTTATGGTCTGTAACCGACAGAAAATGGACGGTTTACAATTCATTACCAAGAGATTTCTGTGACAATTATGCTCTGTGTGGCCCCTATGGATATTGTGATTTTAGGGTCGTTCCATCTTGTAACTGTTTACAAGGGTTTAAGCCAAGATCACCTGAGAATTGGAAGGGAGGGGAATTTGGAGATGGTTGTGAACGAAACAAACCGTTGAATTGTGGCGATGAAGTTGGGTTTGCACAATTCAACCAAATGAAACTGCCTGACACAACGCATACTTGGGTAAACAATAGCATGAATCTTGAAGAATGCAAGCAAAAATGCTTGAGGAATTGTTCTTGTATGGCTTATGCCAATACAAATATCAGTGGGAGTGGCAGTGGCTGTGCCTTATGGATAGGTGATATCATTGACCTGAAAATAATTCCTGGTGCTGGACAAGATTTATATGTTAGGATGCTAGCATCAGAATTAGTCAAGCAAAGAGAGAAACATAAAAGATTGAATCCTAAGGTGAAAATTGCTTTGGTTGTGATTGCCGCGGGTGTAGTTTTGGCTATCCTCTTCATATGCTTATACATTTTCAAACAGAGATCAACCTTCAAAGATGACCATGAGAAATTAGAAGCTGAAGACTTGGAGCTTCCCTTGTTTGATCTATCCTTGATAAATAGTGCCACTAATAACTTCTCACTTGATAATAAGCTTGGAGAAGGTGGCTTTGGACCAGTATATAAGGGTAAGCTTACAAATGGACAAGATATTGCTGTGAAGAGACTTTCAAAGAGTTCTGGACAGGGAATGACCGAGTTCAAGAATGAAGTAATCCTAACTGCAAAGCTTCAACATCGAAATCTTGTAAAACTTCTTGGTTGCTGCATTCAAGGAGATGAGAAAATGCTAGTTTACGAGTACATGCCAAACAAAAGTTTGGACTTCTTTATATTTGATGAGACACGACGTGGACTATTAAACTGGTCACAACGATATCACATTATCTGTGGGATTGCAAGAGGACTTGTGTATCTTCATCAAGATTCCAGATTGAGGATTATACATAGAGACTTAAAAGCAAGTAACGTTTTACTTGACATGGACATGAATCCAAAAATTTCTGATTTTGGTCTTGCTAAAACTTGTGGAGGGGATCAAACTGAAGGAGAGACGGTACGAGTGGTTGGAACCTATGGATATATGGCCCCAGAATATGCTTTCGATGGACAATTCTCAATCAAATCCGATACATTTAGTTATGGCATTTTGTTGTTGGAGATCATTAGTGGAAAAAGAAGCAGAGGATTTCGTCACTCAAATGACCAAAATCTGATTGGTTATGCATGGCAATTATGGAAAGGGGGAAATCCAGCAGAATTGATTGATGACACAATTCATGAAACGTGCAATTTCTCAGAGGTATTGAGATGTATAAATATCAGTTTATTATGCGTTCAACAACATCCCAACGATCGACCCACGATGTCATCGGTAGTTATGATGTTAGGGTGTAAAATTCCTTTGTTACAACCAAAACAACCAGGATTTTTTGCAGAAAATGAAAGCATTCCAATGGATGTATACTCAAGTAAAGAAAAAACAGCTTCAACCAGTGGGTTGACATTATTTGCATTCTCGAATACTCCGTAA 2571 41.66 MYARDSVHVRIVHTQILTSLSSDCSRSHHACPDLVMSSNARPHRRPIASDAIEHNLLTGSVAAIDSLTSQNPFLSDGLTLLSKNGDFELGFFSPGLPSNRYLGIWFKNRRAPTSVWVANRENPINDSSGVLVMSVSTGNLTLYSHNNTVVVWSARLLRKVPNGVLQLLDTGNLVLRDGEDANPQNYSWQSFDYPTDTLLPGMKLGWDLRNKIDRRLSAWKNLNDPSPGSLSWRMELHEYPETVMWIGSKEFFRHGPWNGVRISSWPIGLAPNLVLHFVSNEDEVYYQYTVIDESYTVMLVLNQSINVRTVYLWSVTDRKWTVYNSLPRDFCDNYALCGPYGYCDFRVVPSCNCLQGFKPRSPENWKGGEFGDGCERNKPLNCGDEVGFAQFNQMKLPDTTHTWVNNSMNLEECKQKCLRNCSCMAYANTNISGSGSGCALWIGDIIDLKIIPGAGQDLYVRMLASELVKQREKHKRLNPKVKIALVVIAAGVVLAILFICLYIFKQRSTFKDDHEKLEAEDLELPLFDLSLINSATNNFSLDNKLGEGGFGPVYKGKLTNGQDIAVKRLSKSSGQGMTEFKNEVILTAKLQHRNLVKLLGCCIQGDEKMLVYEYMPNKSLDFFIFDETRRGLLNWSQRYHIICGIARGLVYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGGDQTEGETVRVVGTYGYMAPEYAFDGQFSIKSDTFSYGILLLEIISGKRSRGFRHSNDQNLIGYAWQLWKGGNPAELIDDTIHETCNFSEVLRCINISLLCVQQHPNDRPTMSSVVMMLGCKIPLLQPKQPGFFAENESIPMDVYSSKEKTASTSGLTLFAFSNTP 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33156031 33161222 - Lag0018717.1 Lac5g1633 608275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1633 856 Gene3D Transferase(Phosphotransferase) domain 1 615 814 - -
Lac5g1633 856 PIRSF SRK 52 853 IPR024171 GO:0004674(InterPro)
Lac5g1633 856 SUPERFAMILY Protein kinase-like (PK-like) 523 837 IPR011009 -
Lac5g1633 856 SMART ntp_6 383 462 IPR003609 -
Lac5g1633 856 Pfam S-locus glycoprotein domain 252 360 IPR000858 GO:0048544(InterPro)
Lac5g1633 856 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 69 823 - -
Lac5g1633 856 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 60 191 - -
Lac5g1633 856 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 504 614 - -
Lac5g1633 856 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 615 817 - -
Lac5g1633 856 CDD PAN_AP_plant 379 461 - -
Lac5g1633 856 SMART blect_4 71 194 IPR001480 -
Lac5g1633 856 Pfam D-mannose binding lectin 113 220 IPR001480 -
Lac5g1633 856 ProSiteProfiles PAN/Apple domain profile. 382 463 IPR003609 -
Lac5g1633 856 ProSiteProfiles Bulb-type lectin domain profile. 65 188 IPR001480 -
Lac5g1633 856 SUPERFAMILY alpha-D-mannose-specific plant lectins 114 225 IPR036426 -
Lac5g1633 856 Pfam Protein tyrosine and serine/threonine kinase 540 808 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g1633 856 Gene3D Phosphorylase Kinase; domain 1 512 614 - -
Lac5g1633 856 Gene3D - 61 191 IPR036426 -
Lac5g1633 856 ProSiteProfiles Protein kinase domain profile. 539 816 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g1633 856 CDD STKc_IRAK 545 809 - -
Lac5g1633 856 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g1633 856 SMART serkin_6 539 816 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g1633 856 CDD B_lectin 74 194 IPR001480 -
Lac5g1633 856 Pfam PAN-like domain 383 448 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g1633 Lac-Chr5:33156031 Lac5g1650 Lac-Chr5:33507391 0.00E+00 dispersed
Lac4g2812 Lac-Chr4:46774650 Lac5g1633 Lac-Chr5:33156031 3.10E-124 transposed
Lac2g2648 Lac-Chr2:40772503 Lac5g1633 Lac-Chr5:33156031 1.70E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86194 PF07714 PK_Tyr_Ser-Thr 5.50E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1633 - - - 0.0