Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1661 ATGTCAATGGCCGCCACCTCCACCACCCTCCTCCGGCCGACCCCCTTTCTCGGCCAGACCAAAGGCGCCTCTTCCCAGAACCCCCTCAGAGATGTCGTCGCCATGGGAACTGGAAAATACACCATGGGAAATGATCTGTGGTATGGACCAGACCGAGTGAAGTACTTGGGCCCCTTTTCAGCTCAGACTCCCTCCTACTTGAACGGCGAGTTCCCCGGCGATTATGGATGGGACACTGCCGGCTTGTCCGCCGATCCCGAGGCCTTCGCCAAGAACAGAGCCCTTGAGGTGATCCACGGGAGGTGGGCCATGTTGGGAGCCTTGGGGTGCATAACACCAGAGGTGCTGGCGAAATGGTTGAGAGTGGACTTCAAGGAGCCGGTCTGGTTCAAGGCCGGCGCCCAAATCTTCTCAGAAGGAGGGCTCGACTACCTGGGGAACCCGAACCTGGTCCACGCCCAGAGCATCCTGGCCGTGTTGGGCTTCCAAGTGGTCCTTATGGGCTTGGTCGAAGGCTTCCGCATCAACGGCCTGGACGGCGTCGGCGAGGGCAACGACCTGTACCCGGGCGGCCAGTACTTCGACCCACTCGGACTGGCCGACGACCCAGTCACCTTCGCCGAGCTCAAGGTCAAGGAGATCAAGAACGGCCGCCTCGCCATGTTCTCCATGTTCGGGTTCTTCGTTCAGGCCATCGTCACCGGGAAAGGCCCGCTCGAGAACCTTCTCGACCATCTCGACAACCCTGTCGCCAACAATGCTTGGGTTTATGCCACCAAGTTTGCTCCCGGCTCATAG 798 60.28 MSMAATSTTLLRPTPFLGQTKGASSQNPLRDVVAMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLAKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFAPGS 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33724674 33725645 + Lag0018745.1 Lac5g1661 608303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1661 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 30 264 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Lac5g1661 265 FunFam Chlorophyll a-b binding protein, chloroplastic 54 258 - -
Lac5g1661 265 Gene3D Chlorophyll a/b binding protein domain 54 258 - -
Lac5g1661 265 Pfam Chlorophyll A-B binding protein 64 232 IPR022796 -
Lac5g1661 265 SUPERFAMILY Chlorophyll a-b binding protein 46 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g1661 Lac-Chr5:33724674 Lac6g0319 Lac-Chr6:2619212 1.60E-26 dispersed
Lac10g1066 Lac-Chr10:8639904 Lac5g1661 Lac-Chr5:33724674 8.20E-95 transposed
Lac11g0445 Lac-Chr11:4584187 Lac5g1661 Lac-Chr5:33724674 2.80E-95 transposed
Lac12g0377 Lac-Chr12:4349059 Lac5g1661 Lac-Chr5:33724674 1.50E-101 transposed
Lac1g3495 Lac-Chr1:54257968 Lac5g1661 Lac-Chr5:33724674 2.80E-95 transposed
Lac2g0020 Lac-Chr2:209409 Lac5g1661 Lac-Chr5:33724674 6.00E-55 transposed
Lac9g2258 Lac-Chr9:41942147 Lac5g1661 Lac-Chr5:33724674 2.20E-95 transposed
Lac2g2682 Lac-Chr2:41283517 Lac5g1661 Lac-Chr5:33724674 3.70E-52 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1661 K08914 - vvi:100260599 513.457