Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1786 ATGGATGACGCTGGCGAGAACGGCCGCGAAATCGAGGGCTCCGAGAGGCTGCTCGAATGGCCGTTCTCTGAGGAAAGAGATTCCGTATCGCTCTCGCTAGGGGAGCCGCTTCTGCGTTCCAGTGCTGCCAGGATCAGTACCACCTCTCAGCTCGCCATTGTTGGTTCTAATGTCTGTCCAATCGAGAGCCTCGACTACGAAATTATTGAGAATGACCTTTTCAAGCAAGACTGGAGATCCAGAACAAAGATGGAGATATTTCAGTATGTCATCCTCAAATGGACACTGTGCCTTTGCATTGGTTTAATTACAGGGCTTGTTGGCTTCTTCAACAACATAGCTGTTGAGAATCTTGCTGGTCGTAAACTTCTGGTGACGAATAGTCTCATGCTCAAGGAAAAGTACTTTCAGGCATTTACAGTATATGTTGGTTGCAATATTGTTTTGGCTGCTGCTGCTGCAGCCCTCTGTGCCTATATTGCTCCTGCTGCTGCAGGTTCCGGCATACCTGAGGTGAAAGCATACCTCAATGGTATAGACTCTTATTCTATATTGGCTCCAAGTACCTTATTTGTGAAGATTTTTGGTTCTATATTTGCTGTTGCCGGTGGATTTGTTGTGGGTAAGGAAGGACCCATGGTTCATACTGGGGCATGCATTGCCTCATTACTGGGACAAGGAGGCTCTCGCAAATACCGCTTGACTTGGAAGTGGCTCAGATACTTCAAAAATGATAGGGACAGGCGAGACTTGATCACTTGTGGTGCAGGAGCTGGTGTAGCAGCTGCCTTTCGGGCTCCAGTTGGTGGTGTTCTCTTTGCACTTGAAGAAGCTGCTTCATGGTGGAGGAGTGCTCTTCTCTGGAGGTCCTTTTTCACTACTGCTGTAGTAGCCGTTGTCTTGAGGGGTTTCATGGAATTTTGCCGAGGGGGAAAATGTGGGTTATTTGGTGAAGGAGGTCTCATCATGTTCAACATCAATACAGAAAACTCCACTTATGGCACTCCAGATCTTATCGCAATTGTTTTACTCGGAGTTATTGGTGGTGTGTTTGGAAGCCTTTACAATTACCTCGTCGATAAGGTCCTCCGAACCTACAGCATCATAAATGAGAGAGGTCCCGGATCGAAAGTCATCCTTGTTGTTGGTGTTTCCATATTGACAACCTGTATCTCATTTGGTCTTCCTTGGCTCTCACAATGTTTACCTTGCCCAGCTGACTTAGAGGATGAATGCCCGACTGTTGGTCGCTCAGGAAACTACAAGAACTTCCAATGCCCACCTGGCCATTATAATGATCTTGCTTCCTTATTTTTCAATACCAATGATGATGCCATCCGGAACCTGTTCACATCTGCTACTGACAAGCAATTTCGGCTCTCCTCGCTTATTATCTTTTTTGCTGCTATCTATTGTCTTGGCATTATTACTTATGGCATTGCCGTGCCCTCGGGGCTCTTCATTCCTGTAATACTGGCAGGGGCCTCTTATGGTCGCATTGTAGGGAGATTATTTGGTTCAGTTGCCACTCTTGATGTCAGTCTCTATGCCCTTCTCGGAGCTGCATCCTTCCTTGGTGGCACTATGAGAATGACTGTTTCTCTATGTGTCATACTCCTTGAGCTCACTAATAACCTTTTGATGCTCCCATTACTAATGCTGGTTCTTCTAATTTCGAAGTCGGTGGCAGATATTTTTAATAAGGGTGTCTATGATCAGATTGTGAAGATGAAGGGACTACCTTTTATGGAAGCCCATGCAGAACCTTTTATGAGGCAATTGGTCGCTGGTGGTGTGGCTTCTGGTCCCTTAATTATGTTCTCTGGGATCGAAAAGGTCGATAACATTATCCACGCTTTGAAAATGACAAACCACAACGGGTTTCCTGTAATTGATGAACCGCCTTTCTCAGATAGTTCAGAGCTTTGCGGGATTGTTCTGAGGTCTCATCTGCTTGTTTTGCTTAAAGAAAAAAAGTTTACGAAGCAGAAGTTGTCAATTAGATCAGAAATTTTGAGGACCTTCAAAGCACATGATTTTGCAAAAGCAGGTTCTGGCAAAGGGGTGAAGCTGGAAGATTTGGACTTCAACGAGGAGGAGTTGGAAATGTTTGTTGATCTTCATCCCATTACAAACACGTCGCCCTACACAGTGGTAGAAACAATGTCTGTAGCTAAAGCGGCGATTCTCTTTCACGCACTCGGCTTGAGGCACTTGTTGGTGGTTCCAAAAACACCTGGGAGGCCACCAATTGTTGGAATTCTTACCAGGCACGACTTCATGCCGGAGCATATTCTGGGACTTTACCCGCACCTTAACCCCCACAAGTAG 2331 45.77 MDDAGENGREIEGSERLLEWPFSEERDSVSLSLGEPLLRSSAARISTTSQLAIVGSNVCPIESLDYEIIENDLFKQDWRSRTKMEIFQYVILKWTLCLCIGLITGLVGFFNNIAVENLAGRKLLVTNSLMLKEKYFQAFTVYVGCNIVLAAAAAALCAYIAPAAAGSGIPEVKAYLNGIDSYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAGAGVAAAFRAPVGGVLFALEEAASWWRSALLWRSFFTTAVVAVVLRGFMEFCRGGKCGLFGEGGLIMFNINTENSTYGTPDLIAIVLLGVIGGVFGSLYNYLVDKVLRTYSIINERGPGSKVILVVGVSILTTCISFGLPWLSQCLPCPADLEDECPTVGRSGNYKNFQCPPGHYNDLASLFFNTNDDAIRNLFTSATDKQFRLSSLIIFFAAIYCLGIITYGIAVPSGLFIPVILAGASYGRIVGRLFGSVATLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLIMFSGIEKVDNIIHALKMTNHNGFPVIDEPPFSDSSELCGIVLRSHLLVLLKEKKFTKQKLSIRSEILRTFKAHDFAKAGSGKGVKLEDLDFNEEELEMFVDLHPITNTSPYTVVETMSVAKAAILFHALGLRHLLVVPKTPGRPPIVGILTRHDFMPEHILGLYPHLNPHK 776
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 35672501 35681715 + Lag0018870.1 Lac5g1786 608428
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1786 776 Gene3D - 586 762 IPR046342 -
Lac5g1786 776 Gene3D Clc chloride channel 85 584 - -
Lac5g1786 776 FunFam Chloride channel ClC3 85 400 - -
Lac5g1786 776 CDD CBS_pair_voltage-gated_CLC_euk_bac 586 763 - -
Lac5g1786 776 Pfam CBS domain 711 761 IPR000644 -
Lac5g1786 776 PRINTS Chloride channel signature 193 212 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac5g1786 776 PRINTS Chloride channel signature 570 584 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac5g1786 776 PRINTS Chloride channel signature 162 179 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac5g1786 776 PRINTS Chloride channel signature 532 551 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac5g1786 776 PRINTS Chloride channel signature 514 530 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac5g1786 776 PRINTS Chloride channel signature 257 276 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac5g1786 776 PRINTS Chloride channel signature 482 502 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac5g1786 776 CDD ClC_6_like 62 583 - -
Lac5g1786 776 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 46 764 IPR051280 GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER)
Lac5g1786 776 Pfam Voltage gated chloride channel 150 563 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac5g1786 776 SUPERFAMILY CBS-domain pair 587 761 IPR046342 -
Lac5g1786 776 ProSiteProfiles CBS domain profile. 710 773 IPR000644 -
Lac5g1786 776 SUPERFAMILY Clc chloride channel 71 585 IPR014743 -
Lac5g1786 776 PRINTS Plant CLC chloride channel signature 67 75 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lac5g1786 776 PRINTS Plant CLC chloride channel signature 310 317 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lac5g1786 776 PRINTS Plant CLC chloride channel signature 278 286 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lac5g1786 776 PRINTS Plant CLC chloride channel signature 434 450 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lac5g1786 776 PRINTS Plant CLC chloride channel signature 292 302 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2300 Lac-Chr12:40172889 Lac5g1786 Lac-Chr5:35672501 1.50E-185 dispersed
Lac5g1786 Lac-Chr5:35672501 Lac6g2902 Lac-Chr6:46637919 1.30E-260 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1786 K05016 - csv:101209987 1351.65