Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g1786 | ATGGATGACGCTGGCGAGAACGGCCGCGAAATCGAGGGCTCCGAGAGGCTGCTCGAATGGCCGTTCTCTGAGGAAAGAGATTCCGTATCGCTCTCGCTAGGGGAGCCGCTTCTGCGTTCCAGTGCTGCCAGGATCAGTACCACCTCTCAGCTCGCCATTGTTGGTTCTAATGTCTGTCCAATCGAGAGCCTCGACTACGAAATTATTGAGAATGACCTTTTCAAGCAAGACTGGAGATCCAGAACAAAGATGGAGATATTTCAGTATGTCATCCTCAAATGGACACTGTGCCTTTGCATTGGTTTAATTACAGGGCTTGTTGGCTTCTTCAACAACATAGCTGTTGAGAATCTTGCTGGTCGTAAACTTCTGGTGACGAATAGTCTCATGCTCAAGGAAAAGTACTTTCAGGCATTTACAGTATATGTTGGTTGCAATATTGTTTTGGCTGCTGCTGCTGCAGCCCTCTGTGCCTATATTGCTCCTGCTGCTGCAGGTTCCGGCATACCTGAGGTGAAAGCATACCTCAATGGTATAGACTCTTATTCTATATTGGCTCCAAGTACCTTATTTGTGAAGATTTTTGGTTCTATATTTGCTGTTGCCGGTGGATTTGTTGTGGGTAAGGAAGGACCCATGGTTCATACTGGGGCATGCATTGCCTCATTACTGGGACAAGGAGGCTCTCGCAAATACCGCTTGACTTGGAAGTGGCTCAGATACTTCAAAAATGATAGGGACAGGCGAGACTTGATCACTTGTGGTGCAGGAGCTGGTGTAGCAGCTGCCTTTCGGGCTCCAGTTGGTGGTGTTCTCTTTGCACTTGAAGAAGCTGCTTCATGGTGGAGGAGTGCTCTTCTCTGGAGGTCCTTTTTCACTACTGCTGTAGTAGCCGTTGTCTTGAGGGGTTTCATGGAATTTTGCCGAGGGGGAAAATGTGGGTTATTTGGTGAAGGAGGTCTCATCATGTTCAACATCAATACAGAAAACTCCACTTATGGCACTCCAGATCTTATCGCAATTGTTTTACTCGGAGTTATTGGTGGTGTGTTTGGAAGCCTTTACAATTACCTCGTCGATAAGGTCCTCCGAACCTACAGCATCATAAATGAGAGAGGTCCCGGATCGAAAGTCATCCTTGTTGTTGGTGTTTCCATATTGACAACCTGTATCTCATTTGGTCTTCCTTGGCTCTCACAATGTTTACCTTGCCCAGCTGACTTAGAGGATGAATGCCCGACTGTTGGTCGCTCAGGAAACTACAAGAACTTCCAATGCCCACCTGGCCATTATAATGATCTTGCTTCCTTATTTTTCAATACCAATGATGATGCCATCCGGAACCTGTTCACATCTGCTACTGACAAGCAATTTCGGCTCTCCTCGCTTATTATCTTTTTTGCTGCTATCTATTGTCTTGGCATTATTACTTATGGCATTGCCGTGCCCTCGGGGCTCTTCATTCCTGTAATACTGGCAGGGGCCTCTTATGGTCGCATTGTAGGGAGATTATTTGGTTCAGTTGCCACTCTTGATGTCAGTCTCTATGCCCTTCTCGGAGCTGCATCCTTCCTTGGTGGCACTATGAGAATGACTGTTTCTCTATGTGTCATACTCCTTGAGCTCACTAATAACCTTTTGATGCTCCCATTACTAATGCTGGTTCTTCTAATTTCGAAGTCGGTGGCAGATATTTTTAATAAGGGTGTCTATGATCAGATTGTGAAGATGAAGGGACTACCTTTTATGGAAGCCCATGCAGAACCTTTTATGAGGCAATTGGTCGCTGGTGGTGTGGCTTCTGGTCCCTTAATTATGTTCTCTGGGATCGAAAAGGTCGATAACATTATCCACGCTTTGAAAATGACAAACCACAACGGGTTTCCTGTAATTGATGAACCGCCTTTCTCAGATAGTTCAGAGCTTTGCGGGATTGTTCTGAGGTCTCATCTGCTTGTTTTGCTTAAAGAAAAAAAGTTTACGAAGCAGAAGTTGTCAATTAGATCAGAAATTTTGAGGACCTTCAAAGCACATGATTTTGCAAAAGCAGGTTCTGGCAAAGGGGTGAAGCTGGAAGATTTGGACTTCAACGAGGAGGAGTTGGAAATGTTTGTTGATCTTCATCCCATTACAAACACGTCGCCCTACACAGTGGTAGAAACAATGTCTGTAGCTAAAGCGGCGATTCTCTTTCACGCACTCGGCTTGAGGCACTTGTTGGTGGTTCCAAAAACACCTGGGAGGCCACCAATTGTTGGAATTCTTACCAGGCACGACTTCATGCCGGAGCATATTCTGGGACTTTACCCGCACCTTAACCCCCACAAGTAG | 2331 | 45.77 | MDDAGENGREIEGSERLLEWPFSEERDSVSLSLGEPLLRSSAARISTTSQLAIVGSNVCPIESLDYEIIENDLFKQDWRSRTKMEIFQYVILKWTLCLCIGLITGLVGFFNNIAVENLAGRKLLVTNSLMLKEKYFQAFTVYVGCNIVLAAAAAALCAYIAPAAAGSGIPEVKAYLNGIDSYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAGAGVAAAFRAPVGGVLFALEEAASWWRSALLWRSFFTTAVVAVVLRGFMEFCRGGKCGLFGEGGLIMFNINTENSTYGTPDLIAIVLLGVIGGVFGSLYNYLVDKVLRTYSIINERGPGSKVILVVGVSILTTCISFGLPWLSQCLPCPADLEDECPTVGRSGNYKNFQCPPGHYNDLASLFFNTNDDAIRNLFTSATDKQFRLSSLIIFFAAIYCLGIITYGIAVPSGLFIPVILAGASYGRIVGRLFGSVATLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLIMFSGIEKVDNIIHALKMTNHNGFPVIDEPPFSDSSELCGIVLRSHLLVLLKEKKFTKQKLSIRSEILRTFKAHDFAKAGSGKGVKLEDLDFNEEELEMFVDLHPITNTSPYTVVETMSVAKAAILFHALGLRHLLVVPKTPGRPPIVGILTRHDFMPEHILGLYPHLNPHK | 776 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 35672501 | 35681715 | + | Lag0018870.1 | Lac5g1786 | 608428 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g1786 | 776 | Gene3D | - | 586 | 762 | IPR046342 | - | |
| Lac5g1786 | 776 | Gene3D | Clc chloride channel | 85 | 584 | - | - | |
| Lac5g1786 | 776 | FunFam | Chloride channel ClC3 | 85 | 400 | - | - | |
| Lac5g1786 | 776 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 586 | 763 | - | - | |
| Lac5g1786 | 776 | Pfam | CBS domain | 711 | 761 | IPR000644 | - | |
| Lac5g1786 | 776 | PRINTS | Chloride channel signature | 193 | 212 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac5g1786 | 776 | PRINTS | Chloride channel signature | 570 | 584 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac5g1786 | 776 | PRINTS | Chloride channel signature | 162 | 179 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac5g1786 | 776 | PRINTS | Chloride channel signature | 532 | 551 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac5g1786 | 776 | PRINTS | Chloride channel signature | 514 | 530 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac5g1786 | 776 | PRINTS | Chloride channel signature | 257 | 276 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac5g1786 | 776 | PRINTS | Chloride channel signature | 482 | 502 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac5g1786 | 776 | CDD | ClC_6_like | 62 | 583 | - | - | |
| Lac5g1786 | 776 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 46 | 764 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Lac5g1786 | 776 | Pfam | Voltage gated chloride channel | 150 | 563 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac5g1786 | 776 | SUPERFAMILY | CBS-domain pair | 587 | 761 | IPR046342 | - | |
| Lac5g1786 | 776 | ProSiteProfiles | CBS domain profile. | 710 | 773 | IPR000644 | - | |
| Lac5g1786 | 776 | SUPERFAMILY | Clc chloride channel | 71 | 585 | IPR014743 | - | |
| Lac5g1786 | 776 | PRINTS | Plant CLC chloride channel signature | 67 | 75 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lac5g1786 | 776 | PRINTS | Plant CLC chloride channel signature | 310 | 317 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lac5g1786 | 776 | PRINTS | Plant CLC chloride channel signature | 278 | 286 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lac5g1786 | 776 | PRINTS | Plant CLC chloride channel signature | 434 | 450 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lac5g1786 | 776 | PRINTS | Plant CLC chloride channel signature | 292 | 302 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g2300 | Lac-Chr12:40172889 | Lac5g1786 | Lac-Chr5:35672501 | 1.50E-185 | dispersed | |
| Lac5g1786 | Lac-Chr5:35672501 | Lac6g2902 | Lac-Chr6:46637919 | 1.30E-260 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac5g1786 | K05016 | - | csv:101209987 | 1351.65 |