Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1806 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGATGAGGTCTACAGCGACTTTAAAGGCAGACGTGCCGGCTTGATCAAAGCCCTCACCGCTGATGTTGAGAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAACCTGTGTCTCTATGGACTTCCAAATGAAACATGGGAAGTTAACTTACCTGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCATTAGGCATAAACTTTGCTAGAGATGGAATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGTTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAGTGGAAATGGTAAGCAGTCAAAGGAACAGTCTGCTACTCATAACAATAGCAGCAAAAGCAAGTCGAGTGGGAAGATGCAATCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGCGGGGAAGATGAGGAGGAAGAAGAAGATGATGAGCAGGGTGCAACATGTGGGGCTTGTGGGGACAACTATGGCAACGACGAATTCTGGATTTGTTGTGATGTGTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCCGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGGGCAAGGGTTTGA 771 47.34 MEGMPHPIPRTVDEVYSDFKGRRAGLIKALTADVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQLINDLPSVFEVVSGNGKQSKEQSATHNNSSKSKSSGKMQSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36012989 36019294 - Lag0018890.1 Lac5g1806 608448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1806 256 ProSitePatterns Zinc finger PHD-type signature. 203 249 IPR019786 -
Lac5g1806 256 MobiDBLite consensus disorder prediction 139 172 - -
Lac5g1806 256 CDD PHD_AL_plant 203 252 IPR044104 -
Lac5g1806 256 SMART PHD_3 202 250 IPR001965 -
Lac5g1806 256 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Lac5g1806 256 FunFam PHD finger alfin-like protein 195 251 - -
Lac5g1806 256 Pfam PHD-finger 203 249 IPR019787 -
Lac5g1806 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 251 IPR013083 -
Lac5g1806 256 MobiDBLite consensus disorder prediction 184 201 - -
Lac5g1806 256 PANTHER CPG BINDING PROTEIN 9 255 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Lac5g1806 256 SUPERFAMILY FYVE/PHD zinc finger 191 253 IPR011011 -
Lac5g1806 256 ProSiteProfiles Zinc finger PHD-type profile. 200 252 IPR019787 -
Lac5g1806 256 MobiDBLite consensus disorder prediction 139 202 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g3002 Lac-Chr4:48280054 Lac5g1806 Lac-Chr5:36012989 3.10E-93 dispersed
Lac5g1806 Lac-Chr5:36012989 Lac6g0152 Lac-Chr6:1296865 6.30E-92 dispersed
Lac5g1806 Lac-Chr5:36012989 Lac6g3087 Lac-Chr6:48395336 2.00E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23851 PF12165 Alfin 5.80E-68 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1806 K26274 - csv:101212601 473.781