Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1806 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGATGAGGTCTACAGCGACTTTAAAGGCAGACGTGCCGGCTTGATCAAAGCCCTCACCGCTGATGTTGAGAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAACCTGTGTCTCTATGGACTTCCAAATGAAACATGGGAAGTTAACTTACCTGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCATTAGGCATAAACTTTGCTAGAGATGGAATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGTTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAGTGGAAATGGTAAGCAGTCAAAGGAACAGTCTGCTACTCATAACAATAGCAGCAAAAGCAAGTCGAGTGGGAAGATGCAATCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGCGGGGAAGATGAGGAGGAAGAAGAAGATGATGAGCAGGGTGCAACATGTGGGGCTTGTGGGGACAACTATGGCAACGACGAATTCTGGATTTGTTGTGATGTGTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCCGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGGGCAAGGGTTTGA 771 47.34 MEGMPHPIPRTVDEVYSDFKGRRAGLIKALTADVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQLINDLPSVFEVVSGNGKQSKEQSATHNNSSKSKSSGKMQSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36012989 36019294 - Lag0018890.1 Lac5g1806 608448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1806 256 ProSitePatterns Zinc finger PHD-type signature. 203 249 IPR019786 -
Lac5g1806 256 MobiDBLite consensus disorder prediction 139 172 - -
Lac5g1806 256 CDD PHD_AL_plant 203 252 IPR044104 -
Lac5g1806 256 SMART PHD_3 202 250 IPR001965 -
Lac5g1806 256 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Lac5g1806 256 FunFam PHD finger alfin-like protein 195 251 - -
Lac5g1806 256 Pfam PHD-finger 203 249 IPR019787 -
Lac5g1806 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 251 IPR013083 -
Lac5g1806 256 MobiDBLite consensus disorder prediction 184 201 - -
Lac5g1806 256 PANTHER CPG BINDING PROTEIN 9 255 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Lac5g1806 256 SUPERFAMILY FYVE/PHD zinc finger 191 253 IPR011011 -
Lac5g1806 256 ProSiteProfiles Zinc finger PHD-type profile. 200 252 IPR019787 -
Lac5g1806 256 MobiDBLite consensus disorder prediction 139 202 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1806 K26274 - - csv:101212601 473.781
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g3002 Lac-Chr4:48280054 Lac5g1806 Lac-Chr5:36012989 3.10E-93 dispersed
Lac5g1806 Lac-Chr5:36012989 Lac6g0152 Lac-Chr6:1296865 6.30E-92 dispersed
Lac5g1806 Lac-Chr5:36012989 Lac6g3087 Lac-Chr6:48395336 2.00E-98 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac5g1806 . 1 253 Alfin-like Transcription Factor Family AT1G14510 83.4 1.4e-112 403.3
Lac6g3087 . 9 248 Alfin-like Transcription Factor Family AT1G14510 70.1 2.1e-95 346.3
Lac4g3002 . 157 404 Alfin-like Transcription Factor Family AT1G14510 65.1 8.1e-92 334.3
Lac6g0152 . 1 272 Alfin-like Transcription Factor Family AT1G14510 63.6 8.1e-92 334.3
Lac10g3221 . 8 237 Alfin-like Transcription Factor Family AT1G14510 60.8 1.8e-78 290.0
Lac13g1118 . 63 172 Alfin-like Transcription Factor Family AT1G14510 71.4 1.1e-43 174.5
Lac6g3087 . 1 250 Alfin-like Transcription Factor Family AT5G26210 75.6 6.0e-111 397.9
Lac6g0152 . 1 274 Alfin-like Transcription Factor Family AT5G26210 67.8 1.2e-103 373.6
Lac4g3002 . 157 406 Alfin-like Transcription Factor Family AT5G26210 65.7 6.5e-97 351.3
Lac5g1806 . 9 255 Alfin-like Transcription Factor Family AT5G26210 73.0 7.4e-93 337.8
Lac10g3221 . 8 239 Alfin-like Transcription Factor Family AT5G26210 58.9 4.2e-80 295.4
Lac13g1118 . 62 166 Alfin-like Transcription Factor Family AT5G26210 75.2 5.8e-45 178.7
Lac6g3087 . 1 250 Alfin-like Transcription Factor Family AT3G42790 70.9 2.9e-102 369.0
Lac6g0152 . 1 274 Alfin-like Transcription Factor Family AT3G42790 64.1 3.5e-95 345.5
Lac4g3002 . 157 406 Alfin-like Transcription Factor Family AT3G42790 63.7 1.0e-94 344.0
Lac5g1806 . 9 255 Alfin-like Transcription Factor Family AT3G42790 70.0 2.9e-89 325.9
Lac10g3221 . 8 239 Alfin-like Transcription Factor Family AT3G42790 58.8 6.0e-79 291.6
Lac13g1118 . 62 166 Alfin-like Transcription Factor Family AT3G42790 74.3 4.0e-43 172.6
Lac10g3221 . 1 240 Alfin-like Transcription Factor Family AT5G05610 75.5 2.9e-107 385.6
Lac6g3087 . 8 250 Alfin-like Transcription Factor Family AT5G05610 64.8 2.9e-91 332.4
Lac4g3002 . 166 406 Alfin-like Transcription Factor Family AT5G05610 63.6 1.2e-89 327.0
Lac6g0152 . 8 274 Alfin-like Transcription Factor Family AT5G05610 60.7 1.2e-87 320.5
Lac5g1806 . 9 255 Alfin-like Transcription Factor Family AT5G05610 62.5 1.3e-83 307.0
Lac13g1118 . 56 172 Alfin-like Transcription Factor Family AT5G05610 80.3 1.2e-52 204.1
Lac13g1121 . 1 118 Alfin-like Transcription Factor Family AT5G05610 71.4 7.6e-47 184.9
Lac10g3221 . 43 240 Alfin-like Transcription Factor Family AT3G11200 77.2 1.1e-87 320.5
Lac6g0152 . 66 274 Alfin-like Transcription Factor Family AT3G11200 65.6 2.9e-75 279.3
Lac6g3087 . 44 250 Alfin-like Transcription Factor Family AT3G11200 64.6 3.2e-74 275.8
Lac4g3002 . 200 406 Alfin-like Transcription Factor Family AT3G11200 64.5 1.2e-73 273.9
Lac5g1806 . 44 255 Alfin-like Transcription Factor Family AT3G11200 63.4 1.2e-68 257.3
Lac13g1121 . 1 118 Alfin-like Transcription Factor Family AT3G11200 69.4 6.9e-45 178.3
Lac13g1118 . 98 172 Alfin-like Transcription Factor Family AT3G11200 92.0 1.8e-37 153.7
Lac5g1806 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.7 4.4e-77 285.4
Lac6g3087 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 1.0e-65 247.7
Lac4g3002 . 157 314 Alfin-like Transcription Factor Family AT2G02470 74.1 6.1e-63 238.4
Lac6g0152 . 1 180 Alfin-like Transcription Factor Family AT2G02470 68.3 7.5e-61 231.5
Lac10g3221 . 8 167 Alfin-like Transcription Factor Family AT2G02470 64.2 1.2e-53 207.6
Lac13g1118 . 63 172 Alfin-like Transcription Factor Family AT2G02470 72.3 2.4e-43 173.3
Lac6g3087 . 1 164 Alfin-like Transcription Factor Family AT5G20510 77.0 3.2e-72 268.9
Lac4g3002 . 157 318 Alfin-like Transcription Factor Family AT5G20510 77.1 9.5e-69 257.3
Lac6g0152 . 1 189 Alfin-like Transcription Factor Family AT5G20510 67.4 2.8e-68 255.8
Lac5g1806 . 3 168 Alfin-like Transcription Factor Family AT5G20510 70.2 2.4e-64 242.7
Lac10g3221 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.4e-51 200.3
Lac13g1118 . 62 166 Alfin-like Transcription Factor Family AT5G20510 73.3 1.8e-43 173.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23851 PF12165 Alfin 5.80E-68 No_clan Lac TF