Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1819 ATGGTTCTTGTTGGTTCTTTGCAACTATCCTGTCGTCTTGGACCCTGGAGGAACCATTTGCATGAAGAAAATCTTAAGTTTACCTCTCAGAGCAATAACATACGGTTACTGAGTGCAGCCAGTCCACCGTTTCTTTCACAGAAGAACACTTGGAGCACTCATTTATTTACTATGAAATACCCACCTAATTACATTGTGCCTTCTAGATACAATGTTTTTAGGTGCCATTCGTCATTGATGACAGACCAACCACTGGATCCTCCTGGAATGAAGGCTGCTATAGTGGCATTGACAAGGTTTTGTAATGTATTAGGTGGTTGTCCTCCTCCAGTAGTTAAGTTGGTTCCTGCAGTTTGTATTATCATGTTTGCTGTATGGGGTCTTGGGCCATTTTTGCGTTATACTAGAAGCCTACTCCATAGTGATAATAACTGGAAAAAAAGTCGGACATATAAAGTCATGACCTTGTATCTTCAACCATTATTGCTATGGACTGGAGCAACACTTATTTGCAGAGCTTTGGATCGAGTAGTTTTACCTACAGGGTCTAGCCAAGTTGTGAAGCAACGGATATTGAATTTTGTTAGGTCGTTGTCCACTGTGCTGGCCTTCGCTTATTGCTTATCAAGTATGATTCAACAAGCACAGAAGTTCTTCTCAGAGACTAGCGAATCCAGTGATGCAAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTATACTCTGCAGTATGGGTTGCTGCTATCTCATTGTTCATGGAGCTGTTGGGCTTTTCTACCCAAAAATGGCTTACGGCTGGAGGTCTTGGGACTGTATTGTTGACATTAGCTGGCCGTGAGATCTTCACCAACTTCCTTTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTATTAATGAGTGGATCCAAACAAAGATTGAGGGCTACGAAGTTTCTGGCACTGTTGAGCATGTAGGATGGTGGTCGCCAACGATTATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCACAAGTTTACTATGAATGTCGTTAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTAGCTATCAGCCATTTGGACGTCAATAAAATCAATAATATCGTTGCAGACATGCGGAAAGTCTTAGCCAAGAACCCTCAAGTTGAACAGCAGAAATTGCATAGAAGAGTATTTTTGGACAACGTGGATCCTGAAAATCAGGCACTTTTGATATTGATATCATGTTTTGTCAAGACTTCACATTTTGAAGAATACCTTTGTGTTAAGGAAGCTATAATTTTGGATCTTCTTAGAGTCATTAGACATCACCGGGCTCGACTTGCTACACCAATCCGCACAGTGCAGAAGATGCATAGTGATTCAGACTTGGAAAGCGTTCCATTTGCTGATTCAATATTTGGTCGTGGTGGTGTGACTTTCAATCGTCGAATGCTGATGATTGAACCCCCCAACAAAGTTGATGGAGAAGATAAAAAGCAAAGCCATAGTAGGACATCACGGACAACTGGAGAACAAAATGTTAATCCCATTGCACGGTCGTCGAGCGACAGCAAGGCAGCTAAAGAGACCTCACCATCTGATAGAAAGACAGAAGGCAAGATTGGAGAAGTAAGAGACCCAGATACAAAAAAGCATCCCAAAGTTTCAATGTCAACCTCTGAAGATAAATCTAGCAATGAATTGAAACGCAAATCATCAGCAAAGCCTGATATGCCTTCTTCTGATGCCAAAACAACCAAATCAGATGCTGATAATTCATTTGAGGATTCCAATACCAAGCAATCCGAAAATAGCCCAGGAATTAACAAGCAGAACTACAAGTCTAGCCATCCTGTTGTTTCCATTCCGGAAGATGTTAAGAAACCAGGAGGAACTTCAGCAGCTTCACAGCTAAGGATAGAAGGTGAACAGACACCAGTTTCAAGTCCATCAACAATGAAGCCTGGCGTAGAAGAGAATATAATCCTCGGTGTTGCTTTGGATGGCTCTAAGAGAACACTTCCCATTGAGGAGGACATGCCTTCTTCACCTCAAACCACATCGGGAGCGAAAGATTTGGCAGCACGCTGGAATGGGAACGGGGCGAATGGGGCAACAAACTCCGATAAGGATACGAAACGTCAGACTCCGTGA 2157 42.37 MVLVGSLQLSCRLGPWRNHLHEENLKFTSQSNNIRLLSAASPPFLSQKNTWSTHLFTMKYPPNYIVPSRYNVFRCHSSLMTDQPLDPPGMKAAIVALTRFCNVLGGCPPPVVKLVPAVCIIMFAVWGLGPFLRYTRSLLHSDNNWKKSRTYKVMTLYLQPLLLWTGATLICRALDRVVLPTGSSQVVKQRILNFVRSLSTVLAFAYCLSSMIQQAQKFFSETSESSDARNMGFQFAWKAVYSAVWVAAISLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVINEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTMNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLDNVDPENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHRARLATPIRTVQKMHSDSDLESVPFADSIFGRGGVTFNRRMLMIEPPNKVDGEDKKQSHSRTSRTTGEQNVNPIARSSSDSKAAKETSPSDRKTEGKIGEVRDPDTKKHPKVSMSTSEDKSSNELKRKSSAKPDMPSSDAKTTKSDADNSFEDSNTKQSENSPGINKQNYKSSHPVVSIPEDVKKPGGTSAASQLRIEGEQTPVSSPSTMKPGVEENIILGVALDGSKRTLPIEEDMPSSPQTTSGAKDLAARWNGNGANGATNSDKDTKRQTP 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36181718 36192960 - Lag0018903.1 Lac5g1819 608461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1819 718 MobiDBLite consensus disorder prediction 598 619 - -
Lac5g1819 718 MobiDBLite consensus disorder prediction 490 506 - -
Lac5g1819 718 Gene3D - 297 352 IPR023408 -
Lac5g1819 718 Pfam Mechanosensitive ion channel, beta-domain 281 351 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac5g1819 718 SUPERFAMILY Sm-like ribonucleoproteins 281 351 IPR010920 -
Lac5g1819 718 MobiDBLite consensus disorder prediction 638 656 - -
Lac5g1819 718 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 698 IPR045042 -
Lac5g1819 718 MobiDBLite consensus disorder prediction 490 658 - -
Lac5g1819 718 MobiDBLite consensus disorder prediction 507 528 - -
Lac5g1819 718 Gene3D - 195 295 - -
Lac5g1819 718 MobiDBLite consensus disorder prediction 674 718 - -
Lac5g1819 718 MobiDBLite consensus disorder prediction 680 694 - -
Lac5g1819 718 MobiDBLite consensus disorder prediction 701 718 - -
Lac5g1819 718 MobiDBLite consensus disorder prediction 529 597 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1819 K22047 - - csv:101217250 1155.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g1819 Lac-Chr5:36181718 Lac6g1003 Lac-Chr6:9176436 3.20E-194 dispersed
Lac5g1819 Lac-Chr5:36181718 Lac1g0891 Lac-Chr1:23329130 3.50E-55 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac7g0215 . 153 543 Mechanosensitive Ion Channel Family AT4G00290 66.8 1.6e-152 537.0
Lac7g0217 . 16 269 Mechanosensitive Ion Channel Family AT4G00290 63.0 2.8e-88 323.6
Lac5g1819 . 66 716 Mechanosensitive Ion Channel Family AT5G10490 59.8 1.7e-197 686.8
Lac6g1003 . 9 710 Mechanosensitive Ion Channel Family AT5G10490 53.9 2.2e-189 659.8
Lac6g1003 . 9 501 Mechanosensitive Ion Channel Family AT1G58200 68.4 6.8e-194 674.9
Lac5g1819 . 32 684 Mechanosensitive Ion Channel Family AT1G58200 52.5 1.0e-173 607.8
Lac9g1858 . 47 935 Mechanosensitive Ion Channel Family AT1G53470 56.0 3.5e-267 918.7
Lac9g1858 . 48 930 Mechanosensitive Ion Channel Family AT3G14810 54.0 4.4e-251 865.1
Lac9g1858 . 50 935 Mechanosensitive Ion Channel Family AT1G78610 60.5 4.7e-293 1004.6
Lac4g1220 . 62 923 Mechanosensitive Ion Channel Family AT1G78610 53.7 1.0e-242 837.4
Lac2g0114 . 88 629 Mechanosensitive Ion Channel Family AT1G78610 51.1 2.2e-149 527.3
Lac9g1858 . 226 931 Mechanosensitive Ion Channel Family AT2G17000 61.5 1.1e-238 823.9
Lac4g1220 . 272 926 Mechanosensitive Ion Channel Family AT2G17000 55.8 2.2e-202 703.4
Lac9g1858 . 1 674 Mechanosensitive Ion Channel Family AT2G17010 51.0 1.8e-162 570.5
Lac2g0488 . 69 722 Mechanosensitive Ion Channel Family AT5G19520 52.6 7.2e-181 631.7
Lac3g1066 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.8 1.4e-200 697.2
Lac2g0488 . 64 722 Mechanosensitive Ion Channel Family AT5G12080 55.9 2.1e-196 683.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71