Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1833 ATGGCTCCGGCGACTAACTGGCTTTCCTTTTCGCTCTCTCCCATCGAAATGCTTCGCTCTGCTGACTCTCAGTTCGTTCCTTATGAAACTTCCTCCACCGCCTCTCCTCACTATCTCTTAGACAATTTCTACTCTAATAATGGATGGAGTAATAGTACTAATTCTCACCCAAAATCATCGCAACTTTTCTTCATGGATGGAGACGAAAACAACGAAGTTGTCAAAGAAGATCATCATCATCATCATCATCAATCAACGCCCGCCATTTTCACGAGCTTTCTTCATCCACAAACCCACCACCAACCCAAGCTCGAAGATTTCCTCGGCGAAGTGAGGTATTCCGACAGCCAAACGGAGACCCAAGATTCGTCTTTGACTCATATTTACGACCATGGCTCGGCGGCCTATTTCGGCGACCAACAGGATCTCAAAACCATTGCGGCGTTTCAAGCCTTTTCCGCCAACTCCGGCTCTGAAGTTGACGATTCGGCTTCTATTGCCAGAACCCAGATCGCCGCCGCCGAGATCCCCGCCGCTGCTCATTCTATTGAGTCGTCGGTCAGAAATGAGTTGGGGAGTTTCTCTAACTGCCCCACGGGTGCTCTGTCCCTCGCCGTCGCCCAGAGCTCCGACACGGTGGCGGCTGCGGCTGTTGTGGCGGCGGTCGATTCCGATTCCTCCAAGAAAATTGCTGATACTTTTGGCCAGCGAACTTCCATTTACAGAGGAGTCACTAGGCACAGATGGACGGGTAGATACGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCTAGGAAAGGACGTCAAGGTGGGTATGATAAGGAAGAAAAAGCAGCTAGGGCTTATGATTTGGCAGCTCTGAAGTACTGGGGTCCAACTGCAACCACCAATTTTCCTGTTTCAAATTACACCAAAGAATTGGAAGAGATGAAGCATGTCACCAAGCAAGAGTTCATCGCTTCTCTGCGAAGAAAAAGCAGTGGTTTCTCGAGGGGTGCGTCTATTTACCGAGGTGTAACGAGGCATCATCAGCAGGGTCGATGGCAGGCGAGAATTGGTCGCGTTGCTGGGAATAAGGACCTGTATCTCGGGACATTTGCTACTGAAGAGGAAGCAGCCGAGGCATACGATATAGCAGCGATCAAGTTCAGGGGTTTGAATGCCGTCACGAACTTCGAGATGAGTCGATACGACGTGGAAGCTATTGCGAAGAGTGCGCTACCGATTGGGGGAGCAGCGAAGAGGCTGAAGCTTTGCCTCGAATCGGATCAGAAGCCAATTCCAAGTCATGATCAAACAGCAGCCCAGTGCAGCAGTGGAAGCAACAGCATCAACTTTGGCTCCGCCATTCAGGCCGGGCCACCTATCCCCTGCGGAATTCCGTACGATACTGCGGCCGTGCTGTATCACCACAATTACTTCCACCATCTTCAACCTAACGCCATCGGTTCTTCGGAGTCGACCAGTCCAGCCATTGCAGCGTCGACCGTGGCACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCACCAGTCATATTAG 1551 51.13 MAPATNWLSFSLSPIEMLRSADSQFVPYETSSTASPHYLLDNFYSNNGWSNSTNSHPKSSQLFFMDGDENNEVVKEDHHHHHHQSTPAIFTSFLHPQTHHQPKLEDFLGEVRYSDSQTETQDSSLTHIYDHGSAAYFGDQQDLKTIAAFQAFSANSGSEVDDSASIARTQIAAAEIPAAAHSIESSVRNELGSFSNCPTGALSLAVAQSSDTVAAAAVVAAVDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVEAIAKSALPIGGAAKRLKLCLESDQKPIPSHDQTAAQCSSGSNSINFGSAIQAGPPIPCGIPYDTAAVLYHHNYFHHLQPNAIGSSESTSPAIAASTVAPQAAEFFVWPHQSY 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36354752 36358849 - Lag0018917.1 Lac5g1833 608475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1833 516 CDD AP2 239 305 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g1833 516 ProSiteProfiles AP2/ERF domain profile. 339 397 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g1833 516 PRINTS Ethylene responsive element binding protein signature 379 399 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g1833 516 PRINTS Ethylene responsive element binding protein signature 241 252 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g1833 516 FunFam AP2-like ethylene-responsive transcription factor ANT 239 305 - -
Lac5g1833 516 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 126 433 - -
Lac5g1833 516 SUPERFAMILY DNA-binding domain 239 305 IPR016177 GO:0003677(InterPro)
Lac5g1833 516 CDD AP2 338 399 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g1833 516 SMART rav1_2 240 309 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g1833 516 SMART rav1_2 339 403 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g1833 516 SUPERFAMILY DNA-binding domain 338 399 IPR016177 GO:0003677(InterPro)
Lac5g1833 516 Pfam AP2 domain 340 389 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g1833 516 Gene3D AP2/ERF domain 240 305 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g1833 516 Gene3D AP2/ERF domain 339 399 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g1833 516 ProSiteProfiles AP2/ERF domain profile. 240 303 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g1833 516 FunFam AP2-like ethylene-responsive transcription factor 338 399 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g1833 Lac-Chr5:36354752 Lac9g2842 Lac-Chr9:46412527 1.70E-96 dispersed
Lac5g1833 Lac-Chr5:36354752 Lac6g1794 Lac-Chr6:28856523 1.30E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23853 PF00847 AP2 1.90E-09 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1833 K09285 - csv:101217714 776.163