Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1848 ATGGACATCAACAATTCTTCGAGGCTATTCAACGTCACACTACAAAGAAAAGGTGGATATGTTATAATGGATAATGGCATTGTCCAAGTTACTCTTTCAACTCCCGATGGCGACATGGTTGGATTGAGCTACAATGGAATCGAAAACCTTCTCGAGACCAAAAACGAAGAGCAAAATAGAGGCTATTGGGACGCCGTATGGAACAACCCAAACGAACCCATCTCCACTGACAGATTAAAAGGAACAAGCTTTGAAGTGATAATAGCCAACGAGGAACAACTCGAAATCTCCTTCAACAAAACGTGGAGCTTTGCAGTTGGGAACGAGACGGCTCCTGTAAATGTGGACAAAAGGTACGTAATGGTGAGAGGAAGCTCGGGGATTTACACGTATGCGATATTCGAGAGGCCCATGGGCTGGCCCGAGATTGAAATGGATCAAGTGAGGACTGTTTTCAAGCTTCAGAGCAAAATGTTTGATTATATGGCTGTATCGGACGAAAGGCAGAGGGTGATGCCGACGATGGCCGACCGTGAAAATGGTGAGCCGTTGGCTTATCCTGAGGCTGTTCTCTTGACCAATCCTGCCAATGAGCAACTTAGAGGAGAGGTGGATGACAAGTACCAGTACTCAATAGAGGACAAGGACAACCAAGTTCACGGCTGGATCGGCAGCGATCCGCCGGTGGGATTCTGGATGATCACTCCCAGCGACGAGTTCCGCGTCGCCGGTCCGGTCAAGCAGGATCTCACCTCCCACGCCGGCCCCATCACTCTCTCTATGTTCGTTAGCACCCACTACGCTGGAAAGGACGTTGGTATGAAATTTGCAGCCGGAGAGCCTTGGAAGAAGGTCTTTGGCCCTGTCTTTGTCTATGTCAACTCTGTTTCCCCTGAAGAGGATTCTCTTTCTCTCTGGCAAGATGCCAAGCAACAGTTGGCAGTGGAAATCAGTGAATGGCCGTATACTTTTCCTCAATCTGCTGACTTCCCTTCTTCTGCTCAAAGAGGGAGCGTCGCTGGCCGGTTACTAGTCCGCGATGGGTATATCAGTAGCAGACTGATGCGTGCAAGTAATGCTTTTGTTGGATTGGCATTGCCTGGTCCTGTCGGATCTTGGCAAAGGGAAAGCAAGGGATATCAGTTCTGGACTCGAGCTGACAATCACGGAAACTTCTTAATAAAAAACATCCGAGCTGGGGATTACAATCTGTATGCTTTTGTCCCTGGCTTCATTGGAGATTACAAATACGAGGCAAATATTACAATCGAGCCTGGGTCTGAAATCAGATTGGATGTGATGGTGTTTGATCCGCCAAGGCAAGGCCCAACCATCTGGGAGATTGGCATTCCCGACCGCACTGCAGCGGAGTTTTACGTGCCCGACCCTTATCCGACTCTCATGAATAAACTATACAACAACCAAGCTGACAAGTTCAGACAATATGGCTTGTGGGAACGTTATGCGGCTATGTATCCAAATAATGATCTTGTGTTTACTGTTGGTGTGGATGATTATCGCCAGGACTGGTTCTATGCTCATGTTACCAGGGATGTGGGGAATCAAACATACGAAGCAACCACTTGGGAGATCAGATTCTTATTGCAATCTGTGAACCAAACTGGAAATTACACACTGCAAATTGCATTGGCATCTGCTACTGAATGCGAATTACAGGTTCGATTGAACGATCGAGAGTCAGACCAGGCCAGTTTCTCAACAGGGAGGATTGGAAAGGACAATGCGATTGCAAGGCATGGCATCCATGGACTTTACTGGTTATACTCCATACCTTTTGCTGGGCATCAATTTCTGCAAGGGAACAACTCCATCTATCTCACTCAGGCAAGAAGCGAAAGCCCTTTCTCAGGTCTCATGTATGACTACATTCGACTCGAAGCTCCACCTCTAACATGA 1917 47.52 MDINNSSRLFNVTLQRKGGYVIMDNGIVQVTLSTPDGDMVGLSYNGIENLLETKNEEQNRGYWDAVWNNPNEPISTDRLKGTSFEVIIANEEQLEISFNKTWSFAVGNETAPVNVDKRYVMVRGSSGIYTYAIFERPMGWPEIEMDQVRTVFKLQSKMFDYMAVSDERQRVMPTMADRENGEPLAYPEAVLLTNPANEQLRGEVDDKYQYSIEDKDNQVHGWIGSDPPVGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFVSTHYAGKDVGMKFAAGEPWKKVFGPVFVYVNSVSPEEDSLSLWQDAKQQLAVEISEWPYTFPQSADFPSSAQRGSVAGRLLVRDGYISSRLMRASNAFVGLALPGPVGSWQRESKGYQFWTRADNHGNFLIKNIRAGDYNLYAFVPGFIGDYKYEANITIEPGSEIRLDVMVFDPPRQGPTIWEIGIPDRTAAEFYVPDPYPTLMNKLYNNQADKFRQYGLWERYAAMYPNNDLVFTVGVDDYRQDWFYAHVTRDVGNQTYEATTWEIRFLLQSVNQTGNYTLQIALASATECELQVRLNDRESDQASFSTGRIGKDNAIARHGIHGLYWLYSIPFAGHQFLQGNNSIYLTQARSESPFSGLMYDYIRLEAPPLT 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36687020 36691992 - Lag0018932.1 Lac5g1848 608490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1848 638 FunFam Rhamnogalacturonate lyase B 332 431 - -
Lac5g1848 638 Gene3D - 10 302 IPR014718 GO:0030246(InterPro)
Lac5g1848 638 CDD RGL4_C 446 633 - -
Lac5g1848 638 SUPERFAMILY Starch-binding domain-like 333 434 IPR013784 GO:0030246(InterPro)
Lac5g1848 638 Gene3D - 442 633 - -
Lac5g1848 638 Pfam Rhamnogalacturonate lyase family 12 204 IPR010325 -
Lac5g1848 638 SUPERFAMILY Galactose mutarotase-like 23 296 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Lac5g1848 638 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 10 636 IPR051850 -
Lac5g1848 638 Pfam Polysaccharide lyase family 4, domain III 444 632 IPR029411 -
Lac5g1848 638 CDD RGL4_M 335 431 IPR029413 -
Lac5g1848 638 SUPERFAMILY Galactose-binding domain-like 442 633 IPR008979 -
Lac5g1848 638 Gene3D - 332 434 - -
Lac5g1848 638 CDD RGL4_N 18 302 - -
Lac5g1848 638 Pfam Polysaccharide lyase family 4, domain II 358 430 IPR029413 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g1848 Lac-Chr5:36687020 Lac6g0987 Lac-Chr6:8946403 1.60E-221 dispersed
Lac1g2760 Lac-Chr1:48756583 Lac5g1848 Lac-Chr5:36687020 3.40E-241 wgd
Lac2g0796 Lac-Chr2:6230649 Lac5g1848 Lac-Chr5:36687020 2.10E-221 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1848 K18195 - csv:101215252 1197.96