Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1860 ATGCAGCTTCTTCTTCTCCTCTTTCTCCTTCTTCACCTCCATACCCATCTCTCCATTTCTTCTCACTTGCCGGAATATCGAGCTCTTCTCTCTCTCAAGACCTCCCTTTCCGATGATTCCCAATCGCCGCTCTCCACTTGGGATCCCGCCACCGCCCACTGTACTTGGACTGGAGTCACCTGCGATTTCCGCCGCCACGTCGTCTCCCTCGACCTCTCCGGGATGAATCTCTCCGGTACTCTCTCTCCTGACCTGGGCAGTCTTCGATTTCTTGCTAATCTCTCCGTTGCGGCTAATCTGATTTCCGGCCCGATTCCGCTCGAGATCTCTGCCATCTCTACGCTTAAATCCCTTAACCTCTCTAACAATCTGATTAATGGCACATTCCCCTTGGAACTCTCCTTGCTGAAGAGTCTGGAGGTTCTTGATTTGTATAACAACAATATGTCTGGGAACTTGCCACTTGCGGTCGTCGACTTGCCGAATCTTCGCCATTTGCATCTCGGCGGGAACTTCTTCTCCGGCGTTATTCCGCCGGAGTACGGACGGTGGCAGTTCATAGAGTACTTGGCGGTTTCTGGAAATGAGCTTCAAGGTCCGATTCCGCCGGAGATTGGTAATCTGACGACGCTTCGTGAACTTTACATTGGGTATTACAATACCTACGATGGCGGTTTGCCGCCGGAGATCGGGAACTTATCGGAACTGGTTCGATTGGATGCTGCAAACTGTGGGTTAACGGGTGAGATTCCTCGCGAACTTGGGAAGCTTCAGAAATTGGATACTCTGTTTCTTCAGGTGAACGGTTTTTCTGGGCCTTTGATTCCAGAGCTTGGGAGCTTGAAGGAATTGAAATCCATGGATTTGTCTAACAATATTCTCGTTGGTGAGATTCCGGACTCATTCTCTCAGCTGAAGAACTTGACGCTTTTGCATCTTTTCAGGAATAAGCTTCATGGAGCTATTCCACAGTTCATCGGTGAGTTGCCGGAGTTGGAAGTGTTGCAGTTGTGGGAAAACAACTTCACTGGTTCCATTCCCTATAGTTTAGGGAAGAATGGGAAGCTCGTTGTTCTCGACATTTCATCGAACAAATTGACTGGAACTTTACCTCCTGATATGTGCCATGGAAATCGACTTCAAACTCTGATTACACTCGGCAATTTCTTATTCGGTCCAATCCCTGAATCTCTCGGTAAATGCGAGTCGTTGAGCCGTATTCGAATGGGGGAAAATTTTCTCAATGGTTCAATCCCAAAGGGTCTCTTCGGTTTGCCAAATCTATCCCAAGTTGAGTTGCAGAACAATTTTCTCACCGGAGAATTTCCAGTCACTGATTCCGTCTCTGCAAATCTCGGCCAGATTAGTCTCTCTAATAATCGACTCTCGGGGTCTCTACCACCGATGGTGGGAAATTTCTCCGGCGTCCAGAAGCTTCTCCTGGATGGGAACAAATTCTCCGGCCAAATCCCACCTGAAATCGGGCGGTTACAACAGCTCTCAAAGATTGATTTCAGTCACAACCAATTCTCCGGCCAAATAGCGCCGGAAATCAGCCAATGTAAGCTCTTAACCTTCGTCGATCTCAGTCGCAACGAGCTCTCCGGTGAGATTCCGAACGAAATCACCACAATGAGGATACTGAACTATCTGAATCTCTCAAGAAACCATTTAATCGGAAGCGTTCCTGTCTCAATATCCTCAATGCAGAGCTTAACATCCGTCGATTTTTCATATAACAATCTCTCTGGTTTGGTTCCGGGCACCGGCCAGTTCAGCTACTTCAACTACACCTCATTTCTAGGCAACCCAGATCTCTGTGGCCCTTATTTGGGACCTTGCAAAGATGGGGTCGGCAATGGCACTCAACAGCCCCATTTAAAAGGCTCTCTCTCTGCCTCTGTGAAACTTCTGCTTGTCATCGTCTTGCTCGTATGCTCGATCGCATTTGCAATTGCAGCGATCATCAAAGCTCGGTCTCTAAAACGAGCGAGTGAGTCCCGAGCTTGGAAACTAACCGCATTCCAAAGATTAGATTTCACAGTAGATGACATTTTGGATTGCTTGAAAGAGGACAACATAATAGGGAAGGGAGGCGCCGGCATTGTGTACAAAGGTTTTATGCCGAGCGGTGAACATGTCGCCGTGAAAAGGCTTCCGGCGATGGGCCGAGGGTCGTCCCATGACCATGGATTCAATGCTGAGATACAGACTCTGGGGAGGATTAAACATCGTCACATTGTTAGATTATTGGGATTCTGTTCTAACCATGAAACTAATCTTCTGGTTTATGAGTATATGCCTAATGGGAGTTTAGGGGAAGTTCTGCACGGGAAGAAAGGTGGGCATTTGCAGTGGGATACAAGGTATAAGATCGCCATTGAAGCTGCTAAAGGTCTTTGTTATTTGCATCATGACTGTTCGCCATTGATTGTTCATCGAGATGTGAAATCAAACAATATTCTTCTGGATTCTGATTATGAAGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTTCTTCAGGATTCGGGCACATCAGAGTGTATGTCCGCCATAGCTGGTTCCTACGGATACATAGCTCCAGAATATGCTTATACATTGAAAGTCGACGAGAAGAGCGACGTGTACAGCTTTGGGGTAGTACTCCTGGAGCTTGTGAGTGGGCGAAAGCCAGTCGGAGAATTCGGCGACGGAGTCGACATAGTTCAATGGGTCAGAAAAATGACCAGCCCCAATAACGAAGGGGTAGTAAAAATCATCGATCCACGGCTCTCCTCAATCCCACTCAACGAAGTAACTCACATGTTCTACGTAGCAATGCTATGCGTAGAAGACCAGGCCGTGGAGAGGCCAACAATGAGAGAAGTGGTTCAAATCCTCACAGAACTCCCAAAGGCACCAACTTCAAAGCAAGTAGACTCGAAAGAAGCCGAAGCAACATCCCCATCGCTACCGCCATCGTCGCCACCGCCGCTGCCACCACCGGGGGCGGCGGGATTAGATTCACCAAAGAAAAGGCAGGCACCACCGGATCTTCTGAGCATTTGA 3048 48.03 MQLLLLLFLLLHLHTHLSISSHLPEYRALLSLKTSLSDDSQSPLSTWDPATAHCTWTGVTCDFRRHVVSLDLSGMNLSGTLSPDLGSLRFLANLSVAANLISGPIPLEISAISTLKSLNLSNNLINGTFPLELSLLKSLEVLDLYNNNMSGNLPLAVVDLPNLRHLHLGGNFFSGVIPPEYGRWQFIEYLAVSGNELQGPIPPEIGNLTTLRELYIGYYNTYDGGLPPEIGNLSELVRLDAANCGLTGEIPRELGKLQKLDTLFLQVNGFSGPLIPELGSLKELKSMDLSNNILVGEIPDSFSQLKNLTLLHLFRNKLHGAIPQFIGELPELEVLQLWENNFTGSIPYSLGKNGKLVVLDISSNKLTGTLPPDMCHGNRLQTLITLGNFLFGPIPESLGKCESLSRIRMGENFLNGSIPKGLFGLPNLSQVELQNNFLTGEFPVTDSVSANLGQISLSNNRLSGSLPPMVGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSHNQFSGQIAPEISQCKLLTFVDLSRNELSGEIPNEITTMRILNYLNLSRNHLIGSVPVSISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCKDGVGNGTQQPHLKGSLSASVKLLLVIVLLVCSIAFAIAAIIKARSLKRASESRAWKLTAFQRLDFTVDDILDCLKEDNIIGKGGAGIVYKGFMPSGEHVAVKRLPAMGRGSSHDHGFNAEIQTLGRIKHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSDYEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTSPNNEGVVKIIDPRLSSIPLNEVTHMFYVAMLCVEDQAVERPTMREVVQILTELPKAPTSKQVDSKEAEATSPSLPPSSPPPLPPPGAAGLDSPKKRQAPPDLLSI 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36849506 36852735 + Lag0018944.1 Lac5g1860 608502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1860 1015 Pfam Protein kinase domain 691 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g1860 1015 SMART LRR_typ_2 281 305 IPR003591 -
Lac5g1860 1015 SMART LRR_typ_2 160 184 IPR003591 -
Lac5g1860 1015 SMART LRR_typ_2 354 377 IPR003591 -
Lac5g1860 1015 SMART LRR_typ_2 569 592 IPR003591 -
Lac5g1860 1015 SMART LRR_typ_2 136 159 IPR003591 -
Lac5g1860 1015 SMART LRR_typ_2 497 521 IPR003591 -
Lac5g1860 1015 SMART LRR_typ_2 329 353 IPR003591 -
Lac5g1860 1015 Gene3D Ribonuclease Inhibitor 221 320 IPR032675 -
Lac5g1860 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g1860 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 333 618 - -
Lac5g1860 1015 SUPERFAMILY RNI-like 69 391 - -
Lac5g1860 1015 SUPERFAMILY L domain-like 298 614 - -
Lac5g1860 1015 ProSiteProfiles Protein kinase domain profile. 689 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g1860 1015 SMART serkin_6 689 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g1860 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 82 325 - -
Lac5g1860 1015 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Lac5g1860 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 658 766 - -
Lac5g1860 1015 SUPERFAMILY Protein kinase-like (PK-like) 682 960 IPR011009 -
Lac5g1860 1015 Gene3D Ribonuclease Inhibitor 326 618 IPR032675 -
Lac5g1860 1015 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 963 IPR050647 -
Lac5g1860 1015 MobiDBLite consensus disorder prediction 965 982 - -
Lac5g1860 1015 Gene3D Ribonuclease Inhibitor 178 220 IPR032675 -
Lac5g1860 1015 MobiDBLite consensus disorder prediction 965 1015 - -
Lac5g1860 1015 Gene3D Ribonuclease Inhibitor 24 177 IPR032675 -
Lac5g1860 1015 Gene3D Phosphorylase Kinase; domain 1 654 766 - -
Lac5g1860 1015 MobiDBLite consensus disorder prediction 983 998 - -
Lac5g1860 1015 Gene3D Transferase(Phosphotransferase) domain 1 767 982 - -
Lac5g1860 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 767 977 - -
Lac5g1860 1015 Pfam Leucine Rich Repeat 162 182 IPR001611 GO:0005515(InterPro)
Lac5g1860 1015 Pfam Leucine Rich Repeat 115 134 IPR001611 GO:0005515(InterPro)
Lac5g1860 1015 Pfam Leucine Rich Repeat 548 569 IPR001611 GO:0005515(InterPro)
Lac5g1860 1015 Pfam Leucine Rich Repeat 477 497 IPR001611 GO:0005515(InterPro)
Lac5g1860 1015 Pfam Leucine Rich Repeat 332 352 IPR001611 GO:0005515(InterPro)
Lac5g1860 1015 Pfam Leucine Rich Repeat 284 305 IPR001611 GO:0005515(InterPro)
Lac5g1860 1015 Pfam Leucine Rich Repeat 451 472 IPR001611 GO:0005515(InterPro)
Lac5g1860 1015 Pfam Leucine Rich Repeat 355 375 IPR001611 GO:0005515(InterPro)
Lac5g1860 1015 Pfam Leucine Rich Repeat 500 521 IPR001611 GO:0005515(InterPro)
Lac5g1860 1015 Pfam Leucine Rich Repeat 138 156 IPR001611 GO:0005515(InterPro)
Lac5g1860 1015 Pfam Leucine Rich Repeat 236 257 IPR001611 GO:0005515(InterPro)
Lac5g1860 1015 Pfam Leucine Rich Repeat 524 544 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0915 Lac-Chr10:7306255 Lac5g1860 Lac-Chr5:36849506 4.20E-91 dispersed
Lac1g2728 Lac-Chr1:48470441 Lac5g1860 Lac-Chr5:36849506 1.10E-19 dispersed
Lac1g2730 Lac-Chr1:48509523 Lac5g1860 Lac-Chr5:36849506 3.60E-21 dispersed
Lac1g3684 Lac-Chr1:55936633 Lac5g1860 Lac-Chr5:36849506 2.20E-150 dispersed
Lac5g1755 Lac-Chr5:35244923 Lac5g1860 Lac-Chr5:36849506 2.90E-140 dispersed
Lac5g1860 Lac-Chr5:36849506 Lac5g2786 Lac-Chr5:46234150 6.60E-84 dispersed
Lac5g1860 Lac-Chr5:36849506 Lac5g1862 Lac-Chr5:36897272 4.00E-73 proximal
Lac2g0135 Lac-Chr2:1047543 Lac5g1860 Lac-Chr5:36849506 7.10E-136 transposed
Lac9g0537 Lac-Chr9:10131478 Lac5g1860 Lac-Chr5:36849506 5.50E-32 transposed
Lac9g1090 Lac-Chr9:25645348 Lac5g1860 Lac-Chr5:36849506 1.60E-10 transposed
Lac2g0816 Lac-Chr2:6461500 Lac5g1860 Lac-Chr5:36849506 3.30E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86200 PF07714 PK_Tyr_Ser-Thr 3.70E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1860 - - - 0.0