Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1862 ATGCCATTTCTGAACCTTCCATCATCCTTTCACTTCCTTCTTTTCTCCATCTCCTTCCTCCACTTCTTTCTTCCAGCTCTCTCCTTCAACAGCGACTACGATATTCTGATTCGGGTCAAAAACACCCAACTCGACGACCCCAATGGCAGTTTCAAGAATTGGGTTCCCAACCAAGCTCGCAGCGTCTGTAATTGGACTGGGATCACCTGCGATTCCACAAATTCCTCTGTTGTTTCCATCGATTTGATTAGTTCCGGTGTCGCCGGCGGATTTCCCTTCGATTTTTGCAGTATTCCGACGCTGAAAAACCTCACTATCTCCGACGCCTACATCAATGGAACTTTACTGTCCCCTTCCTTCTCTCTCTGTTCTCACCTGCAACTCCTCAATCTTTCACAGAACTCACTCGTTGGGAATCTGCCGGAGTTTTCTCCTGTTTTCAAAGACCTGCAAGTTCTCGATCTCTCCGGTAACAATTTCACCGGAGAGATTCCTCAGAGTTTCGGCCGGTTGCCGGCGCTGACAAAGCTCCGTTTGACGGCTAATTTGCTCCACGGACCGCTCCCCTCTGTTCTGGGAAATCTCAGTGAGCTAACCGAAATGGCCATCGCTTATATGTCGTCGTCGTTCAAGCCGAGTCCATTACCGTTGGAAATCGGAAACCTGACGAAACTCGAAAATATGTTTTTACCCGAATTGAATCTCATCGGAACCATTCCTGATTCCATTGGAAAACTTGCTCTGCTAACGAATCTCGATTTATCTATCAATTCGATTTCCGGTCCGATCCCGGATTCAATCGGCGGACTGAGGAGCATACAGAAAATTCAGCTATTTAACAACCGAATCTCCGGTGAGTTGCCGGAGAGCATCGGTAATTTGACTAATCTGTATCAACTCGACATCTCTCAGAATAATCTCACCGGGAAATTGCCGGGAAAAATTGCTGCGCTCCCTCTTCAATCTCTGCATCTCAATGACAATTTTCTCGAAGGTGAGGTTCCGGCGAGTTTAGCTTCTAACCCATATCTCTCCCAGTTGAAACTGTTCAACAATAGCTTTTCCGGTGAACTTCCCAGAAATTTGGGTCGGAATTCTGATTTGAATGAGATTGATGTCTCTTCCAATCATTTCGAAGGTGAAGTTCCGAAATTCCTCTGCCATGGAAGCAATCTACAGAGAATCATTTTATTCAACAATGGTTTCTCTGGAAATTTTCCAGAATCGTACGGTAGTTGCAATTCTCTGAATTATGTCAGAATCGAGAACAATCAACTTTCTGGCGAGTTACCAGACTCGTTCTGGAATCTCTCTCAGCTTACCGAAATTCGGTTGTCGGAAAATCGATTTCAGGGTTCAATTCCGCCGTCGATAAACGGCGCTCGTGATCTCGAAGACTTGTTGATTTCCGGCAATAACTTCTCCGGCCAGTTACCGGCGGAGGTTTGCAAATTGCAAAAGCTCGTCCGGTTTGACGTCAGCAGGAACAAATTCTCCGGCGAAGTTCCTTCCTGTATAACAGAGTTGCAGAAACTTCAAAAGCTCGACATGCAAGAAAACATGTTCGCCGGTGAAATACCCAAATCGGTTAACTCGTGGAAAGAATTAACCGAGTTCAATCTGTCCCACAATCAATTTTCCGGCGAGATTCCACCTCAGCTCGGCGATTTACCCGTTCTAAAGTACTTGGATCTCTCTTCAAACTTACTCTCCGGCGAAATCCCCGAGGAATTGACGAAGCTGAAACTGGACGAGTTCAACTTTTCCAACAACAAATTGTCCGGCCAAGTTCCTTCCGGCTTCGACAACGAACTGTTCGTCGGTAGTTTAATGGGTAATCCGGGTCTCTGTAGCCCGGATTTGAAGCCGCTGAACCGGTGCCCGAAGCCCAAACCCATAAGTTTTTATGTCGTCGTTGTTCTGTCGGTTCTGGCTTTCGTTCTCATCGGGTCTCTCATCTGGGTAATCAAATTCAAGATGAATCTCTTCGGGAAATCGAAATCTCCATGGACGGTGACCAAGTTCCAGCGGGTCGGGTTCGATGAAGAAGATGTAATTCCTCATCTAACCAAAGCAAATGTAATCGGGTCAGGCAGTTCGGGTACCGTGTTCAAGGTGGACCTGAAATCGGGTCAGACCGTCGCCGTCAAAAGTCTCTGGGGAGGCCCCGACAAATTGGATTCAGAATCGGTTTTCCAGTCAGAAGTTGAGACATTGGGTCGGATCCGCCATGCCAACATTGTGAAGTTGCTATTCAGTTGCAGCAATGGTGAAGGAAATAGAATTCTTGCGTACGAGTACATGGAGAGTGGGAGCTTGGGAGATGTTTTGCACGAACACAAATCGGAAGCTTTGTCAGATTGGTCGAAAAGATTCGACATCGCCATGGGAGCGGCTCAAGGACTAGCTTATCTGCACCACGACTGCGTGCCTCCAATAATCCATCGCGACGTTAAGAGCAACAACATTCTCTTGGATGGAGAATTTCGACCTCGGGTGGCCGATTTTGGGTTGGCAAAGACATTGCAGCAACAGACGGAGGCCGACGAAGGTGATGTCATGTCTCGCATTGCTGGCTCCTACGGCTACATCGCCCCTGAGTACGGATATACTATGAAGGTGACAGAGAAGAGCGACGTGTATAGTTTCGGAGTGGTGTTAATGGAACTCGTGACAGGGAAGCGACCGAACGATCCGTGCTTCGGGGAGAATAGAGATATTGTGAAATGGGTGATGGAGGCTGCTTTGTTGGAGGGAGAGGAAGAGAAAGGGTTGAGTTTGGATGAGATTATTGATGAAAAATTGGATCCAAGGACATGTGAAGTAGAAGAGATAGTGAAGATTTTGGATGTGGCAGTGCTTTGTACCTCTGCTTTGCCCAATGACAGACCTTCCATGAGAAGAGTAGTTGAGTTGATAAGGGAAAGCAAATCAGCTCGTCCCAAGTCATGA 2952 47.09 MPFLNLPSSFHFLLFSISFLHFFLPALSFNSDYDILIRVKNTQLDDPNGSFKNWVPNQARSVCNWTGITCDSTNSSVVSIDLISSGVAGGFPFDFCSIPTLKNLTISDAYINGTLLSPSFSLCSHLQLLNLSQNSLVGNLPEFSPVFKDLQVLDLSGNNFTGEIPQSFGRLPALTKLRLTANLLHGPLPSVLGNLSELTEMAIAYMSSSFKPSPLPLEIGNLTKLENMFLPELNLIGTIPDSIGKLALLTNLDLSINSISGPIPDSIGGLRSIQKIQLFNNRISGELPESIGNLTNLYQLDISQNNLTGKLPGKIAALPLQSLHLNDNFLEGEVPASLASNPYLSQLKLFNNSFSGELPRNLGRNSDLNEIDVSSNHFEGEVPKFLCHGSNLQRIILFNNGFSGNFPESYGSCNSLNYVRIENNQLSGELPDSFWNLSQLTEIRLSENRFQGSIPPSINGARDLEDLLISGNNFSGQLPAEVCKLQKLVRFDVSRNKFSGEVPSCITELQKLQKLDMQENMFAGEIPKSVNSWKELTEFNLSHNQFSGEIPPQLGDLPVLKYLDLSSNLLSGEIPEELTKLKLDEFNFSNNKLSGQVPSGFDNELFVGSLMGNPGLCSPDLKPLNRCPKPKPISFYVVVVLSVLAFVLIGSLIWVIKFKMNLFGKSKSPWTVTKFQRVGFDEEDVIPHLTKANVIGSGSSGTVFKVDLKSGQTVAVKSLWGGPDKLDSESVFQSEVETLGRIRHANIVKLLFSCSNGEGNRILAYEYMESGSLGDVLHEHKSEALSDWSKRFDIAMGAAQGLAYLHHDCVPPIIHRDVKSNNILLDGEFRPRVADFGLAKTLQQQTEADEGDVMSRIAGSYGYIAPEYGYTMKVTEKSDVYSFGVVLMELVTGKRPNDPCFGENRDIVKWVMEAALLEGEEEKGLSLDEIIDEKLDPRTCEVEEIVKILDVAVLCTSALPNDRPSMRRVVELIRESKSARPKS 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36897272 36900314 + Lag0018946.1 Lac5g1862 608504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1862 983 FunFam Receptor-like protein kinase HSL1 319 624 - -
Lac5g1862 983 Gene3D Ribonuclease Inhibitor 207 314 IPR032675 -
Lac5g1862 983 Gene3D Transferase(Phosphotransferase) domain 1 768 982 - -
Lac5g1862 983 SUPERFAMILY Protein kinase-like (PK-like) 682 972 IPR011009 -
Lac5g1862 983 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 768 983 - -
Lac5g1862 983 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 70 317 - -
Lac5g1862 983 SMART serkin_6 689 979 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g1862 983 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Lac5g1862 983 SUPERFAMILY L domain-like 320 636 - -
Lac5g1862 983 Pfam Leucine Rich Repeat 415 437 IPR001611 GO:0005515(InterPro)
Lac5g1862 983 Pfam Leucine Rich Repeat 536 557 IPR001611 GO:0005515(InterPro)
Lac5g1862 983 Pfam Leucine Rich Repeat 296 316 IPR001611 GO:0005515(InterPro)
Lac5g1862 983 Pfam Leucine Rich Repeat 583 603 IPR001611 GO:0005515(InterPro)
Lac5g1862 983 Pfam Leucine Rich Repeat 560 581 IPR001611 GO:0005515(InterPro)
Lac5g1862 983 Pfam Leucine Rich Repeat 272 294 IPR001611 GO:0005515(InterPro)
Lac5g1862 983 Pfam Leucine Rich Repeat 249 270 IPR001611 GO:0005515(InterPro)
Lac5g1862 983 Pfam Leucine Rich Repeat 439 459 IPR001611 GO:0005515(InterPro)
Lac5g1862 983 Pfam Leucine Rich Repeat 464 485 IPR001611 GO:0005515(InterPro)
Lac5g1862 983 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g1862 983 Pfam Protein kinase domain 691 898 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g1862 983 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 20 975 IPR050647 -
Lac5g1862 983 Gene3D Ribonuclease Inhibitor 315 629 IPR032675 -
Lac5g1862 983 Pfam Leucine rich repeat 124 184 IPR001611 GO:0005515(InterPro)
Lac5g1862 983 Gene3D Phosphorylase Kinase; domain 1 667 767 - -
Lac5g1862 983 ProSiteProfiles Protein kinase domain profile. 689 983 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g1862 983 SUPERFAMILY RNI-like 103 428 - -
Lac5g1862 983 ProSitePatterns Protein kinases ATP-binding region signature. 695 717 IPR017441 GO:0005524(InterPro)
Lac5g1862 983 Gene3D Ribonuclease Inhibitor 28 206 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3361 Lac-Chr1:53234483 Lac5g1862 Lac-Chr5:36897272 1.10E-86 dispersed
Lac3g0960 Lac-Chr3:7793474 Lac5g1862 Lac-Chr5:36897272 3.50E-66 dispersed
Lac5g1862 Lac-Chr5:36897272 Lac6g1064 Lac-Chr6:9754287 1.80E-78 dispersed
Lac5g1860 Lac-Chr5:36849506 Lac5g1862 Lac-Chr5:36897272 4.00E-73 proximal
Lac2g0840 Lac-Chr2:6635619 Lac5g1862 Lac-Chr5:36897272 2.50E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86201 PF00069 Pkinase 1.90E-42 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1862 - - - 0.0