Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1885 ATGGGTTTTGATGATATTTCTCATACAGCCTTGGTTTTGGGCTTAGGGCTCTCAGAAGAAGCTGCCTCTCCAATTATCAACAACAAGTTGAAGAAAAAGCCTGCTCCTTGCTCCTCTACTTCACTTGATTTTGAGCCTTGTGCTTTGACTTTGGGATTCTCCGCCGACACTCACCGGAAACAACTCGTCGACGTCAACAAGATCGTCAACTCCGACGTCATCGCTGTCGATCCGTATCGCCAAGCTTCCCCTCATAGCAGCGCCGTTTGTTCTTCCTTCTCCGGTGGCGGCTGCGGCGGTAGGGTTAAAAGGGAGAGAGACCTCAGCAGTGAAGAAGTTGACTTGGAGAGGGTTTCTTCGAGAGTTAGTGATGAAGATGAAGATGGTTCCAATACTAGAAAGAAACTCAGGCTTTCTAAAGAACAATCCGCTCTCTTGGAAGAGAGTTTCAAACAAAATAGCACTCTCAACCCGAAGCAAAAACAAGCCTTGGCGAGACAATTAAATCTACGGCCACGACAAGTTGAAGTATGGTTTCAGAATAGGAGAGCTCGAACGAAACTGAAGCAAACAGAAGTAGATTGTGAGTTCTTGAAGAAGTGTTGCGAGACGCTGACAGATGAAAACAGAAGACTACAAAAGGAGGTACAAGAATTGAAGGCACTGAAGCTGGCACAGCCTCTATACATGCACATGCCAGCAGCAACATTAACGATGTGTCCTTCATGCGAAAGGGTCGGCGGCGTCGGGGTCGGCGTCGGCGACGGCGCTTCCAAAGCCAAATTTTCAATGGCTCCCAAGCCTCACTTTTACAACCCCTTCTCCAATCCTTCCGCCGCATGTTAG 846 48.11 MGFDDISHTALVLGLGLSEEAASPIINNKLKKKPAPCSSTSLDFEPCALTLGFSADTHRKQLVDVNKIVNSDVIAVDPYRQASPHSSAVCSSFSGGGCGGRVKRERDLSSEEVDLERVSSRVSDEDEDGSNTRKKLRLSKEQSALLEESFKQNSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQELKALKLAQPLYMHMPAATLTMCPSCERVGGVGVGVGDGASKAKFSMAPKPHFYNPFSNPSAAC 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37163796 37164833 + Lag0018969.1 Lac5g1885 608527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1885 281 CDD homeodomain 133 190 IPR001356 GO:0003677(InterPro)
Lac5g1885 281 SMART halz 189 232 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g1885 281 Coils Coil 195 225 - -
Lac5g1885 281 SMART HOX_1 131 193 IPR001356 GO:0003677(InterPro)
Lac5g1885 281 ProSitePatterns 'Homeobox' domain signature. 164 187 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac5g1885 281 SUPERFAMILY Homeodomain-like 120 190 IPR009057 -
Lac5g1885 281 Gene3D - 126 194 - -
Lac5g1885 281 Pfam Homeobox associated leucine zipper 189 223 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g1885 281 MobiDBLite consensus disorder prediction 100 138 - -
Lac5g1885 281 ProSiteProfiles 'Homeobox' domain profile. 129 189 IPR001356 GO:0003677(InterPro)
Lac5g1885 281 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 32 252 IPR050762 -
Lac5g1885 281 Pfam Homeodomain 133 187 IPR001356 GO:0003677(InterPro)
Lac5g1885 281 MobiDBLite consensus disorder prediction 92 138 - -
Lac5g1885 281 FunFam Homeobox-leucine zipper protein 18 118 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0434 Lac-Chr2:3199286 Lac5g1885 Lac-Chr5:37163796 5.10E-55 dispersed
Lac4g2689 Lac-Chr4:45861947 Lac5g1885 Lac-Chr5:37163796 1.50E-53 dispersed
Lac5g1885 Lac-Chr5:37163796 Lac7g0087 Lac-Chr7:738420 1.50E-46 dispersed
Lac1g2717 Lac-Chr1:48403763 Lac5g1885 Lac-Chr5:37163796 1.60E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23856 PF00046 Homeodomain 2.70E-16 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1885 K09338 - csv:101205848 362.844