Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1897 ATGGTGTTAGGTTTAGAATCTGCGGTGTTCCAACAAGATCACTTGATTGGCTATGGTTGGAAAGATCTGCAACCAATGGGAAGAGGCGAAGTTCTTTGGAACTTCGTCTACCACAGATTCGGAGAAGAAGACTACGATGGCTCGGAGATTTTTAACCTGGTCAATTGGGGTCATTCTACTCCACAAAATCATTCTGCCTCGATCGATAATGTTGTTGGACGATCTTTGCCAGAAAATGGTTATGGTATGAATAAAGTGTTGGTATACGACGGAGGATCTTGCCCGATGGAGACTCCGGTGGCGAGGAGAGGGCGGCGGAAGCAACCGAGGGCGAAGGTCGTGAAGAATAGTGAGGAAATTGAGAGCCAAAGAATGACACACATTGCTGTTGAGCGTAATAGGAGAAAGCTAATGAATGAGTACCTGTCTATGCTGAGATCCATGATGCCTTCCTCTTATACTCAAAGGGGAGACCAGGCATCGATCGTCGGAGGGACGATCAACTTTGTGAAGGAGCTAGAACAGCTGCTGCAGTGCTTAGAGGCAGAGAAGCAAACACAACAACAGGCAACGGACGATCAATGGACGACGACCCAGAATATCCTGTCTTATTCCGGCGAGGGTCCGGTGAAGTCGGCGGCGGCGGCGGCGGTGAAGGTGGAGGTGACGGTGATAGAAAGCTACGCGAATATAAAAATGATGGCGGAGAATCGGCCGAAACAGCTGCTGAAAGTGGTGGTGGAATTTCATTCTCTTCGATTTTTGATTCTTCACATTAACGTCACTACCATTCGCCAAATGGTTCTCTATTGTTTCAGCGTTAAGATTGAAGATGATTGTAAACTGAGCACTGTGGGTGAGATTACTGCAGCTGTGAATGAAATGTTCGAACGGATCCATATGGAAAAAGTTTGA 915 47.1 MVLGLESAVFQQDHLIGYGWKDLQPMGRGEVLWNFVYHRFGEEDYDGSEIFNLVNWGHSTPQNHSASIDNVVGRSLPENGYGMNKVLVYDGGSCPMETPVARRGRRKQPRAKVVKNSEEIESQRMTHIAVERNRRKLMNEYLSMLRSMMPSSYTQRGDQASIVGGTINFVKELEQLLQCLEAEKQTQQQATDDQWTTTQNILSYSGEGPVKSAAAAAVKVEVTVIESYANIKMMAENRPKQLLKVVVEFHSLRFLILHINVTTIRQMVLYCFSVKIEDDCKLSTVGEITAAVNEMFERIHMEKV 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37325760 37328526 + Lag0018981.1 Lac5g1897 608539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1897 304 PANTHER MAX DIMERIZATION, MAD 79 297 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac5g1897 304 Pfam Helix-loop-helix DNA-binding domain 123 174 IPR011598 GO:0046983(InterPro)
Lac5g1897 304 Coils Coil 170 190 - -
Lac5g1897 304 Gene3D - 114 190 IPR036638 GO:0046983(InterPro)
Lac5g1897 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 173 IPR011598 GO:0046983(InterPro)
Lac5g1897 304 SMART finulus 128 179 IPR011598 GO:0046983(InterPro)
Lac5g1897 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 191 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g1897 Lac-Chr5:37325760 Lac6g2660 Lac-Chr6:44317132 1.70E-51 dispersed
Lac5g1897 Lac-Chr5:37325760 Lac1g2750 Lac-Chr1:48689311 2.20E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23857 PF00010 HLH 3.60E-09 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1897 - - - 0.0