Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g1897 | ATGGTGTTAGGTTTAGAATCTGCGGTGTTCCAACAAGATCACTTGATTGGCTATGGTTGGAAAGATCTGCAACCAATGGGAAGAGGCGAAGTTCTTTGGAACTTCGTCTACCACAGATTCGGAGAAGAAGACTACGATGGCTCGGAGATTTTTAACCTGGTCAATTGGGGTCATTCTACTCCACAAAATCATTCTGCCTCGATCGATAATGTTGTTGGACGATCTTTGCCAGAAAATGGTTATGGTATGAATAAAGTGTTGGTATACGACGGAGGATCTTGCCCGATGGAGACTCCGGTGGCGAGGAGAGGGCGGCGGAAGCAACCGAGGGCGAAGGTCGTGAAGAATAGTGAGGAAATTGAGAGCCAAAGAATGACACACATTGCTGTTGAGCGTAATAGGAGAAAGCTAATGAATGAGTACCTGTCTATGCTGAGATCCATGATGCCTTCCTCTTATACTCAAAGGGGAGACCAGGCATCGATCGTCGGAGGGACGATCAACTTTGTGAAGGAGCTAGAACAGCTGCTGCAGTGCTTAGAGGCAGAGAAGCAAACACAACAACAGGCAACGGACGATCAATGGACGACGACCCAGAATATCCTGTCTTATTCCGGCGAGGGTCCGGTGAAGTCGGCGGCGGCGGCGGCGGTGAAGGTGGAGGTGACGGTGATAGAAAGCTACGCGAATATAAAAATGATGGCGGAGAATCGGCCGAAACAGCTGCTGAAAGTGGTGGTGGAATTTCATTCTCTTCGATTTTTGATTCTTCACATTAACGTCACTACCATTCGCCAAATGGTTCTCTATTGTTTCAGCGTTAAGATTGAAGATGATTGTAAACTGAGCACTGTGGGTGAGATTACTGCAGCTGTGAATGAAATGTTCGAACGGATCCATATGGAAAAAGTTTGA | 915 | 47.1 | MVLGLESAVFQQDHLIGYGWKDLQPMGRGEVLWNFVYHRFGEEDYDGSEIFNLVNWGHSTPQNHSASIDNVVGRSLPENGYGMNKVLVYDGGSCPMETPVARRGRRKQPRAKVVKNSEEIESQRMTHIAVERNRRKLMNEYLSMLRSMMPSSYTQRGDQASIVGGTINFVKELEQLLQCLEAEKQTQQQATDDQWTTTQNILSYSGEGPVKSAAAAAVKVEVTVIESYANIKMMAENRPKQLLKVVVEFHSLRFLILHINVTTIRQMVLYCFSVKIEDDCKLSTVGEITAAVNEMFERIHMEKV | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 37325760 | 37328526 | + | Lag0018981.1 | Lac5g1897 | 608539 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g1897 | 304 | PANTHER | MAX DIMERIZATION, MAD | 79 | 297 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lac5g1897 | 304 | Pfam | Helix-loop-helix DNA-binding domain | 123 | 174 | IPR011598 | GO:0046983(InterPro) | |
Lac5g1897 | 304 | Coils | Coil | 170 | 190 | - | - | |
Lac5g1897 | 304 | Gene3D | - | 114 | 190 | IPR036638 | GO:0046983(InterPro) | |
Lac5g1897 | 304 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 122 | 173 | IPR011598 | GO:0046983(InterPro) | |
Lac5g1897 | 304 | SMART | finulus | 128 | 179 | IPR011598 | GO:0046983(InterPro) | |
Lac5g1897 | 304 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 122 | 191 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac5g1897 | Lac-Chr5:37325760 | Lac6g2660 | Lac-Chr6:44317132 | 1.70E-51 | dispersed | |
Lac5g1897 | Lac-Chr5:37325760 | Lac1g2750 | Lac-Chr1:48689311 | 2.20E-06 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23857 | PF00010 | HLH | 3.60E-09 | No_clan | Lac | TF |
Pathway information
