Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g1919 | ATGGAATTCGACGATCACGAAGACGACATGGAACTGGAAGCTCCAACAAACTACAACAACAACAACAAACCCCTTTCCCGGCTCAACAAAAACCCAACTCCGGTCCACACAAACCGCCCCACCTACAACTACAAAGAGTGCTTAAAAAACCACGCCGTCGCCGTCGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCTGCAGGACCGGACGGCTCTCTCGACGCCCTCAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGACGTGGCCGACGAAGACGGCGACGGAGAATCTCCGTTCGTTTCGTACTGGCGGGGTCCGGCAGGGTACCTCCACGTAGCGCCGCAGAGGCGGATGCTGGCGCTGCCGTCGCCTAATTCTTGTGGGGGCGGGAGGAAGCGGCTGAGGACGAAGTTCACGGAGGAGCAGAAGGAGAAGATGCTGGTGATGGCGGAGAAGCTGGACTGGCGGATTCAGAAGAACGACGAAGCGGCGGTGATGGAGTTGTGCAATGAAATCGGGGTGAAGCGCCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAAGGAATCTGAAGAAAACAAATTTTCTCTAACAAACTCTCTCAACTGA | 639 | 56.49 | MEFDDHEDDMELEAPTNYNNNNKPLSRLNKNPTPVHTNRPTYNYKECLKNHAVAVGGHALDGCGEFMPAGPDGSLDALKCAACNCHRNFHRKDVADEDGDGESPFVSYWRGPAGYLHVAPQRRMLALPSPNSCGGGRKRLRTKFTEEQKEKMLVMAEKLDWRIQKNDEAAVMELCNEIGVKRRVLKVWMHNNKNTFRKESEENKFSLTNSLN | 212 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 37506557 | 37507195 | + | Lag0019003.1 | Lac5g1919 | 608561 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g1919 | 212 | NCBIfam | homeobox domain, ZF-HD class | 137 | 194 | IPR006455 | - | |
| Lac5g1919 | 212 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Lac5g1919 | 212 | Pfam | ZF-HD protein dimerisation region | 42 | 94 | IPR006456 | - | |
| Lac5g1919 | 212 | SUPERFAMILY | Homeodomain-like | 129 | 198 | IPR009057 | - | |
| Lac5g1919 | 212 | FunFam | Zinc-finger homeodomain protein 2 | 126 | 198 | - | - | |
| Lac5g1919 | 212 | MobiDBLite | consensus disorder prediction | 14 | 36 | - | - | |
| Lac5g1919 | 212 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 22 | 195 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
| Lac5g1919 | 212 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 44 | 93 | IPR006456 | - | |
| Lac5g1919 | 212 | Gene3D | - | 128 | 198 | - | - | |
| Lac5g1919 | 212 | ProSiteProfiles | 'Homeobox' domain profile. | 135 | 199 | IPR001356 | GO:0003677(InterPro) | |
| Lac5g1919 | 212 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 43 | 93 | IPR006456 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac5g1919 | Lac-Chr5:37506557 | Lac6g0980 | Lac-Chr6:8846096 | 3.10E-44 | dispersed | |
| Lac5g1919 | Lac-Chr5:37506557 | Lac1g2792 | Lac-Chr1:49009692 | 3.10E-52 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23859 | PF04770 | ZF-HD_dimer | 1.10E-28 | No_clan | Lac | TF |
Pathway information