Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1919 ATGGAATTCGACGATCACGAAGACGACATGGAACTGGAAGCTCCAACAAACTACAACAACAACAACAAACCCCTTTCCCGGCTCAACAAAAACCCAACTCCGGTCCACACAAACCGCCCCACCTACAACTACAAAGAGTGCTTAAAAAACCACGCCGTCGCCGTCGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCTGCAGGACCGGACGGCTCTCTCGACGCCCTCAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGACGTGGCCGACGAAGACGGCGACGGAGAATCTCCGTTCGTTTCGTACTGGCGGGGTCCGGCAGGGTACCTCCACGTAGCGCCGCAGAGGCGGATGCTGGCGCTGCCGTCGCCTAATTCTTGTGGGGGCGGGAGGAAGCGGCTGAGGACGAAGTTCACGGAGGAGCAGAAGGAGAAGATGCTGGTGATGGCGGAGAAGCTGGACTGGCGGATTCAGAAGAACGACGAAGCGGCGGTGATGGAGTTGTGCAATGAAATCGGGGTGAAGCGCCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAAGGAATCTGAAGAAAACAAATTTTCTCTAACAAACTCTCTCAACTGA 639 56.49 MEFDDHEDDMELEAPTNYNNNNKPLSRLNKNPTPVHTNRPTYNYKECLKNHAVAVGGHALDGCGEFMPAGPDGSLDALKCAACNCHRNFHRKDVADEDGDGESPFVSYWRGPAGYLHVAPQRRMLALPSPNSCGGGRKRLRTKFTEEQKEKMLVMAEKLDWRIQKNDEAAVMELCNEIGVKRRVLKVWMHNNKNTFRKESEENKFSLTNSLN 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37506557 37507195 + Lag0019003.1 Lac5g1919 608561

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1919 212 NCBIfam homeobox domain, ZF-HD class 137 194 IPR006455 -
Lac5g1919 212 MobiDBLite consensus disorder prediction 1 36 - -
Lac5g1919 212 Pfam ZF-HD protein dimerisation region 42 94 IPR006456 -
Lac5g1919 212 SUPERFAMILY Homeodomain-like 129 198 IPR009057 -
Lac5g1919 212 FunFam Zinc-finger homeodomain protein 2 126 198 - -
Lac5g1919 212 MobiDBLite consensus disorder prediction 14 36 - -
Lac5g1919 212 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 22 195 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lac5g1919 212 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 44 93 IPR006456 -
Lac5g1919 212 Gene3D - 128 198 - -
Lac5g1919 212 ProSiteProfiles 'Homeobox' domain profile. 135 199 IPR001356 GO:0003677(InterPro)
Lac5g1919 212 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 43 93 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1919 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g1919 Lac-Chr5:37506557 Lac6g0980 Lac-Chr6:8846096 3.10E-44 dispersed
Lac5g1919 Lac-Chr5:37506557 Lac1g2792 Lac-Chr1:49009692 3.10E-52 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0980 . 52 247 ZF-HD Transcription Factor Family AT5G65410 55.1 1.1e-44 177.9
Lac5g1919 . 44 210 ZF-HD Transcription Factor Family AT4G24660 53.3 1.9e-47 186.8
Lac13g2376 . 85 294 ZF-HD Transcription Factor Family AT2G02540 55.3 4.7e-49 192.6
Lac13g2376 . 85 297 ZF-HD Transcription Factor Family AT1G14440 50.9 6.6e-51 198.7
Lac13g2376 . 85 296 ZF-HD Transcription Factor Family AT1G75240 55.0 1.6e-36 151.0
Lac1g2918 . 97 328 ZF-HD Transcription Factor Family AT2G18350 51.9 1.1e-54 211.1
Lac8g2681 . 17 263 ZF-HD Transcription Factor Family AT5G15210 56.5 5.2e-52 202.2
Lac8g0622 . 1 263 ZF-HD Transcription Factor Family AT5G15210 53.4 1.2e-48 191.0
Lac8g2681 . 10 278 ZF-HD Transcription Factor Family AT3G28920 59.6 5.7e-63 238.8
Lac8g0622 . 1 258 ZF-HD Transcription Factor Family AT3G28920 62.1 1.8e-56 217.2
Lac8g2681 . 12 269 ZF-HD Transcription Factor Family AT5G39760 54.9 1.9e-51 200.7
Lac8g0622 . 1 256 ZF-HD Transcription Factor Family AT5G39760 61.7 3.9e-49 193.0
Lac8g2681 . 67 266 ZF-HD Transcription Factor Family AT1G69600 50.7 2.0e-47 186.8
Lac13g2376 . 85 294 ZF-HD Transcription Factor Family AT2G02540 55.3 4.7e-49 192.6
Lac5g1919 . 44 210 ZF-HD Transcription Factor Family AT4G24660 53.3 1.9e-47 186.8
Lac8g2681 . 12 269 ZF-HD Transcription Factor Family AT5G39760 54.9 1.9e-51 200.7
Lac8g0622 . 1 256 ZF-HD Transcription Factor Family AT5G39760 61.7 3.9e-49 193.0
Lac1g2918 . 97 328 ZF-HD Transcription Factor Family AT2G18350 51.9 1.1e-54 211.1
Lac6g0980 . 52 247 ZF-HD Transcription Factor Family AT5G65410 55.1 1.1e-44 177.9
Lac8g2681 . 67 266 ZF-HD Transcription Factor Family AT1G69600 50.7 2.0e-47 186.8
Lac8g2681 . 17 263 ZF-HD Transcription Factor Family AT5G15210 56.5 5.2e-52 202.2
Lac8g0622 . 1 263 ZF-HD Transcription Factor Family AT5G15210 53.4 1.2e-48 191.0
Lac13g2376 . 85 297 ZF-HD Transcription Factor Family AT1G14440 50.9 6.6e-51 198.7
Lac13g2376 . 85 296 ZF-HD Transcription Factor Family AT1G75240 55.0 1.6e-36 151.0
Lac8g2681 . 10 278 ZF-HD Transcription Factor Family AT3G28920 59.6 5.7e-63 238.8
Lac8g0622 . 1 258 ZF-HD Transcription Factor Family AT3G28920 62.1 1.8e-56 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23859 PF04770 ZF-HD_dimer 1.10E-28 No_clan Lac TF