Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g1941 | ATGGTCCCTGCAGGTGGTTCACTTTTTCTTTATGATCGAAAGGTGTTAAGATACTTCCGCAAGGATGGACATAATTGGAGGAAGAAAAAAGATGGAAAGTCGATAAATGAAGCTCATGAGAAGCTCAAGGCTGAAAGTGTGTATGTGCTGCATTGCTACTATGCCCATGGGGAAGAAAACGAAAATTTTCAGAGGCGCACTTATTGGATGTTGGAAGCGGATTTATCACACATAGTTCTTGTCCACTATCGAGAAGTGCAGAGAATTGTGGAGCGTAAGCGCTTGTTTATTCTTCATCTGCGTTTGGCTAGCTCTTCTAGATTTCTGGAATTGATCTTGGACATTAGCCTTTTTTCCCTTTATTTTAAATGTGGGTAG | 378 | 41.01 | MVPAGGSLFLYDRKVLRYFRKDGHNWRKKKDGKSINEAHEKLKAESVYVLHCYYAHGEENENFQRRTYWMLEADLSHIVLVHYREVQRIVERKRLFILHLRLASSSRFLELILDISLFSLYFKCG | 125 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 37749257 | 37750929 | - | Lag0019025.1 | Lac5g1941 | 608583 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g1941 | 125 | ProSiteProfiles | CG-1 DNA-binding domain profile. | 1 | 92 | IPR005559 | GO:0003677(InterPro) | |
| Lac5g1941 | 125 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA | 3 | 87 | - | GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
| Lac5g1941 | 125 | SMART | CG_1_2 | 1 | 87 | IPR005559 | GO:0003677(InterPro) | |
| Lac5g1941 | 125 | Pfam | CG-1 domain | 3 | 85 | IPR005559 | GO:0003677(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac5g1887 | Lac-Chr5:37179326 | Lac5g1941 | Lac-Chr5:37749257 | 3.40E-33 | dispersed | |
| Lac5g1941 | Lac-Chr5:37749257 | Lac7g1001 | Lac-Chr7:8673863 | 1.40E-15 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac5g1941 | K21596 | - | mdm:103417524 | 162.925 |