Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1941 ATGGTCCCTGCAGGTGGTTCACTTTTTCTTTATGATCGAAAGGTGTTAAGATACTTCCGCAAGGATGGACATAATTGGAGGAAGAAAAAAGATGGAAAGTCGATAAATGAAGCTCATGAGAAGCTCAAGGCTGAAAGTGTGTATGTGCTGCATTGCTACTATGCCCATGGGGAAGAAAACGAAAATTTTCAGAGGCGCACTTATTGGATGTTGGAAGCGGATTTATCACACATAGTTCTTGTCCACTATCGAGAAGTGCAGAGAATTGTGGAGCGTAAGCGCTTGTTTATTCTTCATCTGCGTTTGGCTAGCTCTTCTAGATTTCTGGAATTGATCTTGGACATTAGCCTTTTTTCCCTTTATTTTAAATGTGGGTAG 378 41.01 MVPAGGSLFLYDRKVLRYFRKDGHNWRKKKDGKSINEAHEKLKAESVYVLHCYYAHGEENENFQRRTYWMLEADLSHIVLVHYREVQRIVERKRLFILHLRLASSSRFLELILDISLFSLYFKCG 125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37749257 37750929 - Lag0019025.1 Lac5g1941 608583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1941 125 ProSiteProfiles CG-1 DNA-binding domain profile. 1 92 IPR005559 GO:0003677(InterPro)
Lac5g1941 125 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 3 87 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lac5g1941 125 SMART CG_1_2 1 87 IPR005559 GO:0003677(InterPro)
Lac5g1941 125 Pfam CG-1 domain 3 85 IPR005559 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1941 K21596 - - mdm:103417524 162.925
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g1887 Lac-Chr5:37179326 Lac5g1941 Lac-Chr5:37749257 3.40E-33 dispersed
Lac5g1941 Lac-Chr5:37749257 Lac7g1001 Lac-Chr7:8673863 1.40E-15 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac12g0246 . 10 1093 CAMTA Transcription Factor Family AT5G64220 53.6 4.8e-271 931.8
Lac5g1941 . 3 87 CAMTA Transcription Factor Family AT5G64220 80.0 3.1e-36 151.8
Lac4g1835 . 15 944 CAMTA Transcription Factor Family AT1G67310 52.8 2.7e-255 879.4
Lac11g0922 . 34 875 CAMTA Transcription Factor Family AT3G16940 52.7 5.6e-243 838.2
Lac12g0246 . 10 1093 CAMTA Transcription Factor Family AT5G64220 53.6 4.8e-271 931.8
Lac5g1941 . 3 87 CAMTA Transcription Factor Family AT5G64220 80.0 3.1e-36 151.8
Lac4g1835 . 15 944 CAMTA Transcription Factor Family AT1G67310 52.8 2.7e-255 879.4
Lac11g0922 . 34 875 CAMTA Transcription Factor Family AT3G16940 52.7 5.6e-243 838.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015537 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 3 1 0 0 0 0 0 7