Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1952 ATGATGTTAGTGAAGATGGGAAAACTCTATCCTACATTTCTAATTCTCTCTTGCTTTCATTATTTTGCGCTGTCTGATTTTCAAGGCCAGGCACTCATTGAGTTAAAGAAAGCATTGAATGCAACAGATAGTCAGCTCACAAGTTGGAACGCAAGTCATATCAATCCATGCAGTAGTTGGACCAATATTATGTGTAATGGAAACGATGTGACTACTATATCCTTGCCAACAATGGGATTTACTGGAACCTTGTCTCAGAGTATTGTTGTTCTAAAATCTCTTTCAACCCTGGACTTGAAGGGAAATTACATAACTGGAGAGATACCAGAGGATTTTGGAAACCTGACAAATTTGGTCAGATTGGATCTGGAGAATAACAACCTAACTGGTCAAATACCATCATCCCTGGGTAATCTTAAGAAATTACAGTTCCTAACTTTGAGTCAAAATGAGCTAACTGGGACTATTCCTGAGTCATTTTCAACCCTTCCTCGCTTGATCAATCTTTTTCTTGATTCCAATGATCTCAGTGGCGAAATTCCGGAGCAGTTATTTCAAGTTTCAAAATTCAACTTTTCTGGAAATAAGTTGGATTGTGGCAAAAATTCTCATCGTTCCTGTGCTTCAGACAGTCCAAACTCAGGTGCTTCAAATAAGTCGAAGGTTGGCCTAATGGCTGGAATTATTGCTGGGTTAATAGTTGCTCTTCTTTTGGTCGGATTATTATTTTTCTTGTGCAAGTGTAGATATAAAGGCTACAAGGGTGAAATTTTTGAAGATGTTCCCGGTGAAATTGATCGAAAAATTGCATTTGGTCAGCTGAAAAGATTTTCATGGAGGGAATTACAGCTAGCTACAGAAAACTTTAGTGAGGAAAATGTTATAGGACAAGGAGGCTTTGGAAAGGTTTACAAAGGGGTACTTGCTGATGGCACCGAGGTTGCAGTGAAACAGTCAACTAATTATGAAAGCCATGGGGGAGATGCTGCTTTTCTGCGTGAAGTTGAGATGATCAGTGTAGCTGTTCACAGAAATCTATTGCGGCTGATTGGATTCTGTACAACTCAGACTGAACGCTTATTGGTGTATCCCTTTATGCAGAACTTGAGTGTTGCCTACCATCTTCGAGAACTTAAGCCTGGGGAATCTATTTTAGATTGGCCCACTCGAAAACGTGTGGCATTGGGCACAGCTCGTGGTTTAGGATATCTTCATGAACATTGCAATCCAAAGATTATTCACCGAGATGTTAAGGCTGCTAATGTATTGCTTGATGAGGATTTTGAAGCAGTTGTTGGCGATTTTGGTCTAGCAAAGTTGGTTGATGTTAGGAAGACTAACGTCACAACTCAAGTTCGGGGGACGGCTGGCCATATAGCACCGGAGTACTTATCCACTGGAAAATCATCAGAAAAGACTGATGTTTTTGGTTATGGCATTATGCTTTTAGAACTTGTTACAGGGCAACGTGCAATGGACTTATCACGCTTGGAAGGAGATGACGTTTTACTGCTCGACCATGTCAAAAAATTGGAAAGGGAGAAGCGGCTCAATGCCATTGTGGATGAAAACATGAATAACTATGATATTCAAGAGGTGGAGATGGTGATCCAAGTTGCACTACTGTGCACGCAGCCATCTTCTGTCGAACGACCGACAATGTCACAGGTCGTTCGGATGCTCGAGGGCGAGGGACTCGCAGAGAGGTGGGAAGAATGGCAGCATTTAGAGGTGACTCGCAGACAAGACTATGAGAGAATGCAAAGAAGATTCGCATTGGGGGATAATTCCAATTATAAACAGGAACCTGTCCAGTTGTCTGGTGGAAGATGA 1833 41.57 MMLVKMGKLYPTFLILSCFHYFALSDFQGQALIELKKALNATDSQLTSWNASHINPCSSWTNIMCNGNDVTTISLPTMGFTGTLSQSIVVLKSLSTLDLKGNYITGEIPEDFGNLTNLVRLDLENNNLTGQIPSSLGNLKKLQFLTLSQNELTGTIPESFSTLPRLINLFLDSNDLSGEIPEQLFQVSKFNFSGNKLDCGKNSHRSCASDSPNSGASNKSKVGLMAGIIAGLIVALLLVGLLFFLCKCRYKGYKGEIFEDVPGEIDRKIAFGQLKRFSWRELQLATENFSEENVIGQGGFGKVYKGVLADGTEVAVKQSTNYESHGGDAAFLREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSVAYHLRELKPGESILDWPTRKRVALGTARGLGYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTAGHIAPEYLSTGKSSEKTDVFGYGIMLLELVTGQRAMDLSRLEGDDVLLLDHVKKLEREKRLNAIVDENMNNYDIQEVEMVIQVALLCTQPSSVERPTMSQVVRMLEGEGLAERWEEWQHLEVTRRQDYERMQRRFALGDNSNYKQEPVQLSGGR 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37865251 37874030 + Lag0019036.1 Lac5g1952 608594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1952 610 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Lac5g1952 610 Gene3D Transferase(Phosphotransferase) domain 1 366 581 - -
Lac5g1952 610 FunFam Somatic embryogenesis receptor kinase 1 258 365 - -
Lac5g1952 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g1952 610 SMART LRR_typ_2 91 114 IPR003591 -
Lac5g1952 610 SMART LRR_typ_2 115 139 IPR003591 -
Lac5g1952 610 SMART LRR_typ_2 163 187 IPR003591 -
Lac5g1952 610 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 186 - -
Lac5g1952 610 Gene3D Ribonuclease Inhibitor 25 209 IPR032675 -
Lac5g1952 610 SUPERFAMILY Protein kinase-like (PK-like) 267 562 IPR011009 -
Lac5g1952 610 Pfam Leucine Rich Repeat 93 115 IPR001611 GO:0005515(InterPro)
Lac5g1952 610 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515(InterPro)
Lac5g1952 610 ProSiteProfiles Protein kinase domain profile. 289 566 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g1952 610 SMART serkin_6 289 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g1952 610 Pfam Protein tyrosine and serine/threonine kinase 292 561 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g1952 610 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524(InterPro)
Lac5g1952 610 SUPERFAMILY L domain-like 28 198 - -
Lac5g1952 610 FunFam Somatic embryogenesis receptor-like kinase 1 366 581 - -
Lac5g1952 610 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 608 - -
Lac5g1952 610 Gene3D Phosphorylase Kinase; domain 1 258 365 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g1952 Lac-Chr5:37865251 Lac9g0054 Lac-Chr9:814507 2.10E-157 dispersed
Lac5g1951 Lac-Chr5:37841768 Lac5g1952 Lac-Chr5:37865251 9.30E-221 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86203 PF00069 Pkinase 3.80E-43 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1952 - - - 0.0