Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g1970 ATGTTCCCTCTCTTCCTTCTGCTTCTCTTCTTCCACTTCCCGTCCGCTTCTCCGGCCAAACTCCGCCCCGATTTCTACGCCCAGTCATGCCCTCAGGCGGAGTCCGTCGTCCGCTCTGTGATGCATAATGCTCTGATCAGAGAGCCTCGGAGTGTCGCCTCCGTTATGCGCTTCCAGTTTCACGATTGCTTCGTTAATGGCTGTGATGCTTCTATGTTGTTGGATGATACGCCGACGATGCTTGGAGAGAAACTCTCTCTGTCGAACATAAATTCGCTTAGATCTTACGAAGTTGTTGATGAAGTGAAGGAGGCCTTGGAGAAGGTCTGTCCTGGAATTGTCTCTTGTGCAGATATCATTATCATGGCATCTAGAGACGCTGTTGCGCTGACGGGCGGCCCCAACTGGACAGTGAGATTGGGCAGGCTGGACAGCTTAACAGCAAGCCAAGAGGACTCAAACCAGATCATGCCAAGTCCAAGAGCCAATGCAAGCTCTCTCATTGACCTCTTCAGCAAATACAACCTCTCTGTCAAAGATCTGGTTTCTCTTTCGGGTTCGCACTCGATCGGCCAAGGTCGGTGTTTCTCCGTCATGTTTCGGCTCTACAACCAATCTGGTACCGGACGGCCGGACCCGGCCATCGAACCGAGCTTCAGAGAAGAGCTCTTCAAGCGATGCCCTCAAGGTGGGGATGAAAATGTCACGGTGAACCTTGACTCCACACCTTATGTTTTTGACAATCAGTACTTCAAGGACTTGGTTGGTGGGAGAGGGTTCTTGAATTCTGATGAAACTCTTTACACATTTGCTGAAACTAGAAGGTATGTGAGGTTTTTTAGCAAAAATCAAAGGGCATTTTTCAGGGCGTTTGTGGAGGGTATGCTGAAGATGGGGGACTTGCAGTCTGGCCGGCTGGGGGAAGTAAGAAGGAACTGTAGGGTAGTGAATGGCCAGTCTGTGATCATATAA 972 50.1 MFPLFLLLLFFHFPSASPAKLRPDFYAQSCPQAESVVRSVMHNALIREPRSVASVMRFQFHDCFVNGCDASMLLDDTPTMLGEKLSLSNINSLRSYEVVDEVKEALEKVCPGIVSCADIIIMASRDAVALTGGPNWTVRLGRLDSLTASQEDSNQIMPSPRANASSLIDLFSKYNLSVKDLVSLSGSHSIGQGRCFSVMFRLYNQSGTGRPDPAIEPSFREELFKRCPQGGDENVTVNLDSTPYVFDNQYFKDLVGGRGFLNSDETLYTFAETRRYVRFFSKNQRAFFRAFVEGMLKMGDLQSGRLGEVRRNCRVVNGQSVII 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38109412 38111314 - Lag0019054.1 Lac5g1970 608612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g1970 323 FunFam Peroxidase 158 298 - -
Lac5g1970 323 PANTHER PEROXIDASE 72-RELATED 12 316 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g1970 323 Gene3D Peroxidase, domain 2 158 298 - -
Lac5g1970 323 ProSiteProfiles Plant heme peroxidase family profile. 20 317 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g1970 323 CDD secretory_peroxidase 20 316 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac5g1970 323 FunFam Peroxidase 24 167 - -
Lac5g1970 323 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g1970 323 PRINTS Plant peroxidase signature 30 49 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g1970 323 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g1970 323 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g1970 323 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g1970 323 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g1970 323 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g1970 323 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g1970 323 PRINTS Plant peroxidase signature 54 74 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g1970 323 Gene3D - 24 317 - -
Lac5g1970 323 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g1970 323 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g1970 323 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g1970 323 PRINTS Haem peroxidase superfamily signature 52 66 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g1970 323 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g1970 323 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Lac5g1970 323 SUPERFAMILY Heme-dependent peroxidases 21 317 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g1970 323 Pfam Peroxidase 37 282 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g1970 Lac-Chr5:38109412 Lac9g2881 Lac-Chr9:46741595 6.50E-70 dispersed
Lac5g1970 Lac-Chr5:38109412 Lac5g2087 Lac-Chr5:39510460 1.60E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g1970 K00430 - csv:116406146 566.614