Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2005 ATGTCGGTCGCCAACACCGACGCTTATCCGACCATGTCATCGGAGGCCTCAACGGTCGGGGATATGCATGCCCTCGACGTTGAGAAGAGCAGCAGCAGCCCCGCCGATAGGGCTCGGTGGGTGGTGAACCCACCGGAGCCACCGGGGTTATGGCGAGAGCTCCTCGATTCCCTCCGCGACACCATTCTTCCCGATCCGACCAAGCTTTTGTCCCTCAAGAAGAAGACCGGAACCCCTTTGGTTGGTACCCTTTTGCAGGCCATCTTCCCCATCCTCTCATGGGGCCGGAGCTACAACACCGGCAAGTTCAAGAACGACGTCTTGGCCGGTTTGACCCTTGCTAGCCTCTGCATTCCTCAGAGTATTGGATATGCAAATCTGGCGAAGCTTGATCCTGAATATGGGCTGTATACGAGCATTGTGCCGCCGCTGGTTTATGCAGTGTTGGGAAGTTCGAGGGAAATAGCCATCGGACCAGTGGCCATAGTTTCTCTGCTTCTGCCGTCCATGATCGACAAAATTCAAGATCCCGCCGCCGACCCTCTTGCCTACAGAAACCTTGTCTTCACCGCCACCTTCTTCGCCGGAATCTTTCAAGCCGCCTTTGGACTCTTCGGGCTGGGATTTTTGGTGGATTTTCTGTCACATGCTGCCATAGTTGGGTTCATGGGTGGAGCAGCCATTGTAATTGGGCTTCAACAGCTCAAAGGACTGCTTGGAATCACTCACTTCACTAACAAAACTGATGTCCTCTCTGTTATGGAAGCTGTGTTTGGATCATTCCACCATGATCCTTGGAATCCGTTGAACTTCATCATTGGCTCCTCGTTCCTGTCATTCATCCTCATCACCAGATTACTAGGAAAAAAGTACAAGAAACTGTTCTGGTTACCAGCCATAGCCCCACTTCTATCTGTAATCCTATCAACACTTGTAGTGTTCCTCACAAGAGCCGACCACCATGGCGTCAAGATCGTCAAGCGAGTCCCCGCCGGCCTCAACCCCATCTCCGCTCACCACATCCAAATCCACAGCCCTCACCTCCCCCAAATCGCCAAGATCAGCCTCATCGTCGCCGTCGTTGCCCTCACGGAGGCAATTGCAGTGGGCAGATCGTTCGCCTCCATGAAAGGATACAACATTGATGGAAACAGAGAGATGGTTGCGTTGGGCTTCATGAACGTTGCCGGGTCTCTCACTTCTTGCTACACCGCAACTGGTTCTTTCTCGCGATCGGCGGTGAATTTCAGTGCTGGATGCGAGACGGCGGTATCGAACATAGTGATGGCATTAACAGTGATGATATCATTGGAGCTGTTGACAAAGCTTTTGTATTTCACTCCCAACGCCATTCTCGCTTCCATCATTCTCTCTGCACTTCCAGGCCTCATTGATCTCCATGAAGCTTACAATATCTGGAACATCGACAAGCTCGACTTCTTCTCCTGCCTCGGAGCTTTTCTTGGAGTCCTCTTTGTTTCCGTCGAAATCGGCCTTCTCCTTTCGGTAGTGATATCATTTGCAAAGATAATACTAATCTCAATCAAACCCGGGACTGAGATTTTAGGAAAACTCCCTGGAACTGATACCTTTTGTGATATTCATCAATATCCAATGGCTCTCAACACTCCTGGAGTCCTCATCATTCGTGTTAAATCTGGCTTGCTTTGCTTTGCCAATGCCAACTTCGTCAAAGATAGGATTATGAGGTTCATCAGCAGCCAAGAAGATGCATCAGCAAAGAGAACCATTCACTTCCTAATCATTGATCTTTCCAGTTTAATGAACATTGACACTTCAGGAATTGCTTCTCTTGAAGAACTGCAGAATAGTTTGGCAGCCAGTGGAGTAGAGTTGGCCATTGCAAATCCAAAATGGCAAGTGATTCACAAGTTAAAGGTAGCAAATTTTGTTGCCAAGCTCAAAGGGAGAGTGTTCTTGAGTGTTGGGGAAGCTGTGGATGCATGCCTTTCAGCTAAAATGGGAGCCATCTAA 1995 49.42 MSVANTDAYPTMSSEASTVGDMHALDVEKSSSSPADRARWVVNPPEPPGLWRELLDSLRDTILPDPTKLLSLKKKTGTPLVGTLLQAIFPILSWGRSYNTGKFKNDVLAGLTLASLCIPQSIGYANLAKLDPEYGLYTSIVPPLVYAVLGSSREIAIGPVAIVSLLLPSMIDKIQDPAADPLAYRNLVFTATFFAGIFQAAFGLFGLGFLVDFLSHAAIVGFMGGAAIVIGLQQLKGLLGITHFTNKTDVLSVMEAVFGSFHHDPWNPLNFIIGSSFLSFILITRLLGKKYKKLFWLPAIAPLLSVILSTLVVFLTRADHHGVKIVKRVPAGLNPISAHHIQIHSPHLPQIAKISLIVAVVALTEAIAVGRSFASMKGYNIDGNREMVALGFMNVAGSLTSCYTATGSFSRSAVNFSAGCETAVSNIVMALTVMISLELLTKLLYFTPNAILASIILSALPGLIDLHEAYNIWNIDKLDFFSCLGAFLGVLFVSVEIGLLLSVVISFAKIILISIKPGTEILGKLPGTDTFCDIHQYPMALNTPGVLIIRVKSGLLCFANANFVKDRIMRFISSQEDASAKRTIHFLIIDLSSLMNIDTSGIASLEELQNSLAASGVELAIANPKWQVIHKLKVANFVAKLKGRVFLSVGEAVDACLSAKMGAI 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38503155 38512413 + Lag0019089.1 Lac5g2005 608647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2005 664 Pfam STAS domain 537 652 IPR002645 -
Lac5g2005 664 ProSitePatterns SLC26A transporters signature. 132 153 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Lac5g2005 664 Gene3D STAS domain 516 659 IPR036513 -
Lac5g2005 664 CDD STAS_SulP_like_sulfate_transporter 537 647 - -
Lac5g2005 664 MobiDBLite consensus disorder prediction 20 41 - -
Lac5g2005 664 Pfam Sulfate permease family 103 484 IPR011547 GO:0016020(InterPro)
Lac5g2005 664 FunFam Sulfate transporter 31 516 659 - -
Lac5g2005 664 NCBIfam sulfate permease 90 647 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac5g2005 664 ProSiteProfiles STAS domain profile. 553 656 IPR002645 -
Lac5g2005 664 PANTHER SULFATE TRANSPORTER 83 658 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac5g2005 664 SUPERFAMILY SpoIIaa-like 543 656 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2005 Lac-Chr5:38503155 Lac8g1916 Lac-Chr8:37470810 1.80E-223 dispersed
Lac5g2005 Lac-Chr5:38503155 Lac2g0871 Lac-Chr2:6864122 6.20E-184 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2005 K17469 - csv:101213063 1019.61