Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g2008 | ATGGGGCGAGTTAAGTTGCAGATCAAGAGAATCGAAAACAACACCAATCGACAGGTCACTTTCTCCAAACGCAGAAATGGACTCATCAAAAAGGCTTACGAACTCTCCATTCTCTGCGACATTGATATCGCTCTCATCATGTTCTCTCCTTCCGGCCGCCTCAGCCAATTCTCCGGCCGCCGCAGAATCGAGGATGTTCTTGCTCGTTACATAAATTTGCCAGATCATGATAGAGGAAGCGTTGTTCAGAATAAAGAGTTTTTACTTGGGACACTAAATAATCTGAAGACAGAGAACGATATCGCCCTTCAACTTGCCAATCCTACATCAAGCAACTCCAATGTTGAGGAGCTTCAACAAGAGGTTGGTACATTGAGACACGAGCTTCAACTTGCGGAGCAGCAGCTCAGGTTATTCGAACCCGATCCTCTCTCATTCACATCGAATGGTGAAATAGAATCTTGTGAGAAGAACCTTTTGGACATCTTGACACGAATCACTCAAAAAAAGAAAGATCTATTAAGTAATCACTTATCTCCTTACGATCCTCCAAATCAGATCCAGATATATTTGGATTCACAAGAGGGAATACCAACGACCTTTGAAAACGATGTTGCTAATTGGTTGCCCGAAAGTAATGGGCAGAACTCCACCCAAATTTGTGTTGCCTCCGAGTCTTCTTCAATTCCTCAAAGTGGTCAATATCCATCGACAGTTTATGATCAAGTATCCCAAGCAACCAACATCAACGTCGGGTCATGCAACATTGGTGGCTGCGACATCGGAAACCCGAACGATGATGGCTACTCTCCTTGGCATCACAACTACACCACAACTCAACTCCTCTCTTCCTTCATCCCACAAGCCTCATTTGACACTCTAAAGCATGAAATCGGAGAGCCTTGCATGAACACAATGATGTCACAACAGCAAGTTGATACTAACAATCTCAAATGGGAACCAAATGCCTCCGAGTGA | 978 | 44.07 | MGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIALQLANPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIESCEKNLLDILTRITQKKKDLLSNHLSPYDPPNQIQIYLDSQEGIPTTFENDVANWLPESNGQNSTQICVASESSSIPQSGQYPSTVYDQVSQATNINVGSCNIGGCDIGNPNDDGYSPWHHNYTTTQLLSSFIPQASFDTLKHEIGEPCMNTMMSQQQVDTNNLKWEPNASE | 325 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 38525209 | 38528933 | - | Lag0019092.1 | Lac5g2008 | 608650 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g2008 | 325 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2008 | 325 | SUPERFAMILY | SRF-like | 2 | 81 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2008 | 325 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2008 | 325 | Coils | Coil | 115 | 135 | - | - | |
| Lac5g2008 | 325 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2008 | 325 | CDD | MADS_MEF2_like | 2 | 75 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
| Lac5g2008 | 325 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2008 | 325 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2008 | 325 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2008 | 325 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 229 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Lac5g2008 | 325 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2008 | 325 | Gene3D | - | 13 | 90 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac5g2008 | 325 | FunFam | MADS-box transcription factor 41 | 13 | 91 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g0086 | Lac-Chr10:673299 | Lac5g2008 | Lac-Chr5:38525209 | 1.10E-20 | dispersed | |
| Lac2g0369 | Lac-Chr2:2756627 | Lac5g2008 | Lac-Chr5:38525209 | 1.60E-16 | dispersed | |
| Lac5g2008 | Lac-Chr5:38525209 | Lac5g2878 | Lac-Chr5:47035658 | 2.40E-19 | dispersed | |
| Lac5g2008 | Lac-Chr5:38525209 | Lac13g0329 | Lac-Chr13:2358369 | 2.40E-24 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23861 | PF00319 | SRF-TF | 9.50E-26 | No_clan | Lac | TF |
Pathway information