Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2008 ATGGGGCGAGTTAAGTTGCAGATCAAGAGAATCGAAAACAACACCAATCGACAGGTCACTTTCTCCAAACGCAGAAATGGACTCATCAAAAAGGCTTACGAACTCTCCATTCTCTGCGACATTGATATCGCTCTCATCATGTTCTCTCCTTCCGGCCGCCTCAGCCAATTCTCCGGCCGCCGCAGAATCGAGGATGTTCTTGCTCGTTACATAAATTTGCCAGATCATGATAGAGGAAGCGTTGTTCAGAATAAAGAGTTTTTACTTGGGACACTAAATAATCTGAAGACAGAGAACGATATCGCCCTTCAACTTGCCAATCCTACATCAAGCAACTCCAATGTTGAGGAGCTTCAACAAGAGGTTGGTACATTGAGACACGAGCTTCAACTTGCGGAGCAGCAGCTCAGGTTATTCGAACCCGATCCTCTCTCATTCACATCGAATGGTGAAATAGAATCTTGTGAGAAGAACCTTTTGGACATCTTGACACGAATCACTCAAAAAAAGAAAGATCTATTAAGTAATCACTTATCTCCTTACGATCCTCCAAATCAGATCCAGATATATTTGGATTCACAAGAGGGAATACCAACGACCTTTGAAAACGATGTTGCTAATTGGTTGCCCGAAAGTAATGGGCAGAACTCCACCCAAATTTGTGTTGCCTCCGAGTCTTCTTCAATTCCTCAAAGTGGTCAATATCCATCGACAGTTTATGATCAAGTATCCCAAGCAACCAACATCAACGTCGGGTCATGCAACATTGGTGGCTGCGACATCGGAAACCCGAACGATGATGGCTACTCTCCTTGGCATCACAACTACACCACAACTCAACTCCTCTCTTCCTTCATCCCACAAGCCTCATTTGACACTCTAAAGCATGAAATCGGAGAGCCTTGCATGAACACAATGATGTCACAACAGCAAGTTGATACTAACAATCTCAAATGGGAACCAAATGCCTCCGAGTGA 978 44.07 MGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIALQLANPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIESCEKNLLDILTRITQKKKDLLSNHLSPYDPPNQIQIYLDSQEGIPTTFENDVANWLPESNGQNSTQICVASESSSIPQSGQYPSTVYDQVSQATNINVGSCNIGGCDIGNPNDDGYSPWHHNYTTTQLLSSFIPQASFDTLKHEIGEPCMNTMMSQQQVDTNNLKWEPNASE 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38525209 38528933 - Lag0019092.1 Lac5g2008 608650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2008 325 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2008 325 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2008 325 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2008 325 Coils Coil 115 135 - -
Lac5g2008 325 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2008 325 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lac5g2008 325 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2008 325 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2008 325 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2008 325 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac5g2008 325 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2008 325 Gene3D - 13 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2008 325 FunFam MADS-box transcription factor 41 13 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2008 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0086 Lac-Chr10:673299 Lac5g2008 Lac-Chr5:38525209 1.10E-20 dispersed
Lac2g0369 Lac-Chr2:2756627 Lac5g2008 Lac-Chr5:38525209 1.60E-16 dispersed
Lac5g2008 Lac-Chr5:38525209 Lac5g2878 Lac-Chr5:47035658 2.40E-19 dispersed
Lac5g2008 Lac-Chr5:38525209 Lac13g0329 Lac-Chr13:2358369 2.40E-24 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac13g0329 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 2.4e-95 346.7
Lac10g0086 . 1 262 Type I MADS-box Gene Family AT2G03060 50.4 1.5e-65 247.7
Lac5g2636 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 4.1e-38 156.0
Lac5g2636 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 1.8e-50 197.2
Lac5g2008 . 1 230 Type I MADS-box Gene Family AT1G77950 51.0 3.9e-54 209.1
Lac3g3071 . 1 157 Type I MADS-box Gene Family AT5G48670 67.5 7.7e-55 211.8
Lac10g1488 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.0e-47 187.2
Lac13g0329 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 2.4e-95 346.7
Lac10g0086 . 1 262 Type I MADS-box Gene Family AT2G03060 50.4 1.5e-65 247.7
Lac5g2636 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 4.1e-38 156.0
Lac5g2636 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 1.8e-50 197.2
Lac5g2008 . 1 230 Type I MADS-box Gene Family AT1G77950 51.0 3.9e-54 209.1
Lac3g3071 . 1 157 Type I MADS-box Gene Family AT5G48670 67.5 7.7e-55 211.8
Lac10g1488 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.0e-47 187.2
Lac13g0329 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 2.4e-95 346.7
Lac10g0086 . 1 262 Type I MADS-box Gene Family AT2G03060 50.4 1.5e-65 247.7
Lac5g2636 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 1.8e-50 197.2
Lac3g3071 . 1 157 Type I MADS-box Gene Family AT5G48670 67.5 7.7e-55 211.8
Lac10g1488 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.0e-47 187.2
Lac5g2636 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 4.1e-38 156.0
Lac5g2008 . 1 230 Type I MADS-box Gene Family AT1G77950 51.0 3.9e-54 209.1
Lac13g0329 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 2.4e-95 346.7
Lac10g0086 . 1 262 Type I MADS-box Gene Family AT2G03060 50.4 1.5e-65 247.7
Lac5g2636 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 1.8e-50 197.2
Lac3g3071 . 1 157 Type I MADS-box Gene Family AT5G48670 67.5 7.7e-55 211.8
Lac10g1488 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.0e-47 187.2
Lac5g2636 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 4.1e-38 156.0
Lac5g2008 . 1 230 Type I MADS-box Gene Family AT1G77950 51.0 3.9e-54 209.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23861 PF00319 SRF-TF 9.50E-26 No_clan Lac TF