Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2008 ATGGGGCGAGTTAAGTTGCAGATCAAGAGAATCGAAAACAACACCAATCGACAGGTCACTTTCTCCAAACGCAGAAATGGACTCATCAAAAAGGCTTACGAACTCTCCATTCTCTGCGACATTGATATCGCTCTCATCATGTTCTCTCCTTCCGGCCGCCTCAGCCAATTCTCCGGCCGCCGCAGAATCGAGGATGTTCTTGCTCGTTACATAAATTTGCCAGATCATGATAGAGGAAGCGTTGTTCAGAATAAAGAGTTTTTACTTGGGACACTAAATAATCTGAAGACAGAGAACGATATCGCCCTTCAACTTGCCAATCCTACATCAAGCAACTCCAATGTTGAGGAGCTTCAACAAGAGGTTGGTACATTGAGACACGAGCTTCAACTTGCGGAGCAGCAGCTCAGGTTATTCGAACCCGATCCTCTCTCATTCACATCGAATGGTGAAATAGAATCTTGTGAGAAGAACCTTTTGGACATCTTGACACGAATCACTCAAAAAAAGAAAGATCTATTAAGTAATCACTTATCTCCTTACGATCCTCCAAATCAGATCCAGATATATTTGGATTCACAAGAGGGAATACCAACGACCTTTGAAAACGATGTTGCTAATTGGTTGCCCGAAAGTAATGGGCAGAACTCCACCCAAATTTGTGTTGCCTCCGAGTCTTCTTCAATTCCTCAAAGTGGTCAATATCCATCGACAGTTTATGATCAAGTATCCCAAGCAACCAACATCAACGTCGGGTCATGCAACATTGGTGGCTGCGACATCGGAAACCCGAACGATGATGGCTACTCTCCTTGGCATCACAACTACACCACAACTCAACTCCTCTCTTCCTTCATCCCACAAGCCTCATTTGACACTCTAAAGCATGAAATCGGAGAGCCTTGCATGAACACAATGATGTCACAACAGCAAGTTGATACTAACAATCTCAAATGGGAACCAAATGCCTCCGAGTGA 978 44.07 MGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIALQLANPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIESCEKNLLDILTRITQKKKDLLSNHLSPYDPPNQIQIYLDSQEGIPTTFENDVANWLPESNGQNSTQICVASESSSIPQSGQYPSTVYDQVSQATNINVGSCNIGGCDIGNPNDDGYSPWHHNYTTTQLLSSFIPQASFDTLKHEIGEPCMNTMMSQQQVDTNNLKWEPNASE 325
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 38525209 38528933 - Lag0019092.1 Lac5g2008 608650
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2008 325 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2008 325 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2008 325 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2008 325 Coils Coil 115 135 - -
Lac5g2008 325 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2008 325 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lac5g2008 325 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2008 325 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2008 325 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2008 325 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac5g2008 325 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2008 325 Gene3D - 13 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2008 325 FunFam MADS-box transcription factor 41 13 91 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0086 Lac-Chr10:673299 Lac5g2008 Lac-Chr5:38525209 1.10E-20 dispersed
Lac2g0369 Lac-Chr2:2756627 Lac5g2008 Lac-Chr5:38525209 1.60E-16 dispersed
Lac5g2008 Lac-Chr5:38525209 Lac5g2878 Lac-Chr5:47035658 2.40E-19 dispersed
Lac5g2008 Lac-Chr5:38525209 Lac13g0329 Lac-Chr13:2358369 2.40E-24 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23861 PF00319 SRF-TF 9.50E-26 No_clan Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2008 - - - 0.0