Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g2020 | ATGAACTCATCATCCACTAAACTTTACAATCCAGGGAGGATGGGATTGTATGAACCTATCCACCAGCTTGGAATGTGGGGAGAAACCTTTAGAAGCAATGCCAATTTAGATGCACCATCTCTTATTATGCATCCCGATACCAAGTTAGAAAATCAGTCAGATGATGCTTCGCTCGGTTCATTAGGAGATACCCATATATATGACCAAGAAGATACCAAACGTATCGATAAGATTCAAAGACGGCTCGCTCAAAATCGGGAAGCAGCTCGCAAAAGTCGCCTCCGAAAGAAGGCTTATATCAAGCAATTGGAAACGAGCCGCTTGAAACTCATTCAATTAGAGCAAGAGCTTGAAAAAGCAAGACAACAAGGTCTGTTTGCTGGATCCCGATTTGATAATAACCAGTTGGGTTTATCTGGAACCACGAATTCAGGCATCTCCGCATTTGAATCAGAGTATGAGCAATGGGTAGAAGAGCAGAACAGGCAGATTTGTGATCTGAGGACTGCTGTGCATGCTGACATTACTGATATCGAGCTTCGAATACTCGTAGAAAATGCAATGAGACACTACTTTAAATTTTTTCGCATGAAAGCTAAAGCTGCAAAAGCCGATGTCTCTTACATTATGTCAGGCATGTGGAAAACATCAGCCGAAAGACTTTTCTTATGGATCGGAGGATTTCGCCCTTCAGAACTTCTTAAGGTTTTGATACCTCAGCTGGAGACACTGACCGATCAACAAATTTCAGAAACTAGTAGCCTTAGGAAATCGTGTCTTCAAGCAGAAGATGCTCTACGACAAGGTATGGAAAAGCTCCAACAAAATCTATTTGAAAGCGTAGTGGCTGGTCAGCTGGGTGAAGGAAGCTGTCCCCTACAGATGACTGCTGCAATGGAGAGATTAGAAGCTCTCATTAGCTTTGTGAATCAGGCTGACCATCTACGACAGGAAACATTGCAACAGATGTACAAAATTCTAACAACTCGGCAATCTGCTCAAGGTCTTCTTACTTTAGGGGAGTTTTTCCAACGACTCCGAGCATTGAGCTCGCTTTGGGCGAACCGTACTGGTACTTGTGAGCCTGCATAG | 1092 | 43.32 | MNSSSTKLYNPGRMGLYEPIHQLGMWGETFRSNANLDAPSLIMHPDTKLENQSDDASLGSLGDTHIYDQEDTKRIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRLKLIQLEQELEKARQQGLFAGSRFDNNQLGLSGTTNSGISAFESEYEQWVEEQNRQICDLRTAVHADITDIELRILVENAMRHYFKFFRMKAKAAKADVSYIMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLETLTDQQISETSSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLGEGSCPLQMTAAMERLEALISFVNQADHLRQETLQQMYKILTTRQSAQGLLTLGEFFQRLRALSSLWANRTGTCEPA | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 38646574 | 38658405 | + | Lag0019104.1 | Lac5g2020 | 608662 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g2020 | 363 | ProSiteProfiles | DOG1 domain profile. | 146 | 356 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Lac5g2020 | 363 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 80 | 95 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac5g2020 | 363 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 75 | 119 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac5g2020 | 363 | Pfam | Seed dormancy control | 163 | 238 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Lac5g2020 | 363 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 2 | 357 | - | - | |
Lac5g2020 | 363 | FunFam | BZIP family transcription factor | 76 | 125 | - | - | |
Lac5g2020 | 363 | Coils | Coil | 96 | 123 | - | - | |
Lac5g2020 | 363 | Gene3D | - | 76 | 125 | - | - | |
Lac5g2020 | 363 | SUPERFAMILY | Leucine zipper domain | 78 | 119 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac5g2020 | 363 | SMART | brlzneu | 73 | 135 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac5g2020 | 363 | Pfam | bZIP transcription factor | 76 | 111 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac5g2020 | Lac-Chr5:38646574 | Lac8g3028 | Lac-Chr8:47066081 | 3.60E-101 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23862 | PF14144 | DOG1 | 1.80E-28 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac5g2020 | K14431 | - | csv:101208419 | 648.277 |