Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2020 ATGAACTCATCATCCACTAAACTTTACAATCCAGGGAGGATGGGATTGTATGAACCTATCCACCAGCTTGGAATGTGGGGAGAAACCTTTAGAAGCAATGCCAATTTAGATGCACCATCTCTTATTATGCATCCCGATACCAAGTTAGAAAATCAGTCAGATGATGCTTCGCTCGGTTCATTAGGAGATACCCATATATATGACCAAGAAGATACCAAACGTATCGATAAGATTCAAAGACGGCTCGCTCAAAATCGGGAAGCAGCTCGCAAAAGTCGCCTCCGAAAGAAGGCTTATATCAAGCAATTGGAAACGAGCCGCTTGAAACTCATTCAATTAGAGCAAGAGCTTGAAAAAGCAAGACAACAAGGTCTGTTTGCTGGATCCCGATTTGATAATAACCAGTTGGGTTTATCTGGAACCACGAATTCAGGCATCTCCGCATTTGAATCAGAGTATGAGCAATGGGTAGAAGAGCAGAACAGGCAGATTTGTGATCTGAGGACTGCTGTGCATGCTGACATTACTGATATCGAGCTTCGAATACTCGTAGAAAATGCAATGAGACACTACTTTAAATTTTTTCGCATGAAAGCTAAAGCTGCAAAAGCCGATGTCTCTTACATTATGTCAGGCATGTGGAAAACATCAGCCGAAAGACTTTTCTTATGGATCGGAGGATTTCGCCCTTCAGAACTTCTTAAGGTTTTGATACCTCAGCTGGAGACACTGACCGATCAACAAATTTCAGAAACTAGTAGCCTTAGGAAATCGTGTCTTCAAGCAGAAGATGCTCTACGACAAGGTATGGAAAAGCTCCAACAAAATCTATTTGAAAGCGTAGTGGCTGGTCAGCTGGGTGAAGGAAGCTGTCCCCTACAGATGACTGCTGCAATGGAGAGATTAGAAGCTCTCATTAGCTTTGTGAATCAGGCTGACCATCTACGACAGGAAACATTGCAACAGATGTACAAAATTCTAACAACTCGGCAATCTGCTCAAGGTCTTCTTACTTTAGGGGAGTTTTTCCAACGACTCCGAGCATTGAGCTCGCTTTGGGCGAACCGTACTGGTACTTGTGAGCCTGCATAG 1092 43.32 MNSSSTKLYNPGRMGLYEPIHQLGMWGETFRSNANLDAPSLIMHPDTKLENQSDDASLGSLGDTHIYDQEDTKRIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRLKLIQLEQELEKARQQGLFAGSRFDNNQLGLSGTTNSGISAFESEYEQWVEEQNRQICDLRTAVHADITDIELRILVENAMRHYFKFFRMKAKAAKADVSYIMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLETLTDQQISETSSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLGEGSCPLQMTAAMERLEALISFVNQADHLRQETLQQMYKILTTRQSAQGLLTLGEFFQRLRALSSLWANRTGTCEPA 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38646574 38658405 + Lag0019104.1 Lac5g2020 608662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2020 363 ProSiteProfiles DOG1 domain profile. 146 356 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lac5g2020 363 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 80 95 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2020 363 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 75 119 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2020 363 Pfam Seed dormancy control 163 238 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lac5g2020 363 PANTHER TRANSCRIPTION FACTOR TGA9 2 357 - -
Lac5g2020 363 FunFam BZIP family transcription factor 76 125 - -
Lac5g2020 363 Coils Coil 96 123 - -
Lac5g2020 363 Gene3D - 76 125 - -
Lac5g2020 363 SUPERFAMILY Leucine zipper domain 78 119 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2020 363 SMART brlzneu 73 135 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g2020 363 Pfam bZIP transcription factor 76 111 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2020 Lac-Chr5:38646574 Lac8g3028 Lac-Chr8:47066081 3.60E-101 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23862 PF14144 DOG1 1.80E-28 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2020 K14431 - csv:101208419 648.277