Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2024 ATGAAGAAACGGCTGAATGGAGCTTTGGTCTTGCTCTGGTTCATCTTTTTGGGGCAACTGTGTGCCAATGTCTCTGCAACTGTAGAAGCTACTGCTCTGCATATATTTCGATCGAATTTGGAAGATCCAAACAATGTTCTGCAGAGTTGGGATCCCACCCTTGTTAACCCTTGCACTTGGTTTCATGTTACTTGCAACAATGAAAATAACATTATAAGAGTCGACCTTGGAAATGCTGGATTGTCTGGTAAATTAGTACCACAGCTTGGTCAACTTAAAAGTCTTCAATACTTAGAGCTTTATGGTAACAACATAAGTGGAGATATTCCAGATGATCTTGGGAATCTGGAAAACTTGGTGAGCCTAGACCTTTACTTGAACGGTTTAACTGGCCCAATTCCAGACACGTTTGGCAAGCTCACACAATTGCGTTTCCTTCGGCTAAATGACAACAAACTATCTGGCTTGATACCAATTTCCTTGACTAATATTTCCACTCTGCAAGTCTTGGATCTATCAAACAACCTTTTATCTGGAAAGGTTCCAAATAATGGATCATTTTCACTATTTACTCCCATCAGTTTCGCAAATAACTTGGATATATGCGGTCTGGTAACTGGGAAACCCTGCCCTGGGGATCCTCCTTTTTCTCCACCACCACCATATGTTCCGCAGCCAACAGTTTCTTCCCATGAACTAAACAATCCCAATGGAGCAATTGTTGGAGGAGTTGCTGCGGGTGCTGCTTTACTTTTTGCCACTCCAGCTATCATATTCGTCTATTGGCATCAGAGGAGATCACGAGAAATATTCTTTGATGTGCCTGCGGAAGAAGATTCAGAGATCAACTTGGGGCAGCTGAAAAGGTTTTCTCTAAGAGACTTGCAAGTTGCAACAGATAACTTCAGCAACAAAAATATTCTTGGTCGAGGTGGATTTGGTAAAGTGTACAGGGGACGCTTGGCTGACGGCTCATTAGTAGCAGTAAAAAGGCTCAAAGAAGAGCGTACGCCAGGTGGAGAGTTGCAGTTCCAGACAGAAGTAGAGATGATTAGCATGGCTGTGCATCGGAATCTTTTGCGACTACAAGGGTTTTGTACAACAACAACTGAACGCCTCCTTGTTTATCCTTATATGGCTAACGGAAGTGTTGCATCATGTTTAAGAGAACGTCCACAATCCGAAGCTCCTCTTGACTGGCCAACTCGGAAGAAAGTTGCATTAGGCTCTGCTAGGGGCCTTTCTTATTTACATGATGGATGTGATCCGAAAATCATCCATCGTGATGTGAAAGCTGCAAATATTTTACTGGACGAGGAGTTCGAGGCTATCGTCGGCGATTTTGGTCTTGCAAAATTAATGGACTACAAGGATACCCACGTTACAACAGCAGTAAGAGGTACTATTGGGCATATAGCTCCGGAGTATCTCTCAACTGGGAAGTCATCTGAAAAGACTGATGTTTTTGGTTATGGCATTATGCTCTTGGAGCTCATAACCGGACAGAGGGCTTTCGATCTTGCTCGACTTGCAAACGATGAAGATGTTATGCTGCTTGATTGGGTCAAAGGCCTTCTGAAAGAGAAAAGGTTGGAGATGTTGGTTGACCCTGATCTGAAGGACAATTATGATGAAGTTGAAGTTGAGCAAATAATCCAAGTAGCACTTCTCTGCACACAGAGCTCTCCCATGGAACGACCGAAGATGTCCGATGTGGTCAGAATGCTCGAAGGAGACGGCTTGACTGAGCGATGGGAGGAATGGCAGAGAGTCGAGGTAGTATACCACGAAGCTGAATTGGCATCTTCTCAAACCTCTGAATGGATGGTCGATTCGACCGAAAACGTTCGTGCTTTTGAATTATCCGGTCCTAGGTAA 1878 43.88 MKKRLNGALVLLWFIFLGQLCANVSATVEATALHIFRSNLEDPNNVLQSWDPTLVNPCTWFHVTCNNENNIIRVDLGNAGLSGKLVPQLGQLKSLQYLELYGNNISGDIPDDLGNLENLVSLDLYLNGLTGPIPDTFGKLTQLRFLRLNDNKLSGLIPISLTNISTLQVLDLSNNLLSGKVPNNGSFSLFTPISFANNLDICGLVTGKPCPGDPPFSPPPPYVPQPTVSSHELNNPNGAIVGGVAAGAALLFATPAIIFVYWHQRRSREIFFDVPAEEDSEINLGQLKRFSLRDLQVATDNFSNKNILGRGGFGKVYRGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLQGFCTTTTERLLVYPYMANGSVASCLRERPQSEAPLDWPTRKKVALGSARGLSYLHDGCDPKIIHRDVKAANILLDEEFEAIVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDEDVMLLDWVKGLLKEKRLEMLVDPDLKDNYDEVEVEQIIQVALLCTQSSPMERPKMSDVVRMLEGDGLTERWEEWQRVEVVYHEAELASSQTSEWMVDSTENVRAFELSGPR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38675701 38679894 - Lag0019108.1 Lac5g2024 608666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2024 625 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Lac5g2024 625 Pfam Leucine Rich Repeat 167 184 IPR001611 GO:0005515(InterPro)
Lac5g2024 625 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515(InterPro)
Lac5g2024 625 Pfam Leucine Rich Repeat 94 116 IPR001611 GO:0005515(InterPro)
Lac5g2024 625 Pfam Protein tyrosine and serine/threonine kinase 305 576 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g2024 625 SMART serkin_6 302 576 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2024 625 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Lac5g2024 625 SUPERFAMILY L domain-like 29 195 - -
Lac5g2024 625 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Lac5g2024 625 ProSiteProfiles Protein kinase domain profile. 302 589 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2024 625 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524(InterPro)
Lac5g2024 625 FunFam Somatic embryogenesis receptor-like kinase 1 379 596 - -
Lac5g2024 625 FunFam Somatic embryogenesis receptor kinase 1 25 212 - -
Lac5g2024 625 SUPERFAMILY Protein kinase-like (PK-like) 282 577 IPR011009 -
Lac5g2024 625 Gene3D Ribonuclease Inhibitor 26 212 IPR032675 -
Lac5g2024 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 625 - -
Lac5g2024 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g2024 625 Gene3D Transferase(Phosphotransferase) domain 1 379 596 - -
Lac5g2024 625 FunFam Somatic embryogenesis receptor kinase 1 271 378 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g2298 Lac-Chr2:31301489 Lac5g2024 Lac-Chr5:38675701 1.40E-13 dispersed
Lac5g2024 Lac-Chr5:38675701 Lac5g2713 Lac-Chr5:45595236 6.70E-204 dispersed
Lac5g2024 Lac-Chr5:38675701 Lac2g2300 Lac-Chr2:31343464 9.50E-243 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86204 PF00069 Pkinase 1.80E-43 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2024 K13418 - csv:101208905 1115.91