Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g2027 | ATGAGCGGCCACAAGCGAAACCCCACCACCACCACCGCCGCAGGCAGCCCCGTCGGCAGCCCCACCTCCGGCAACATCTCCGACAGCTCCACCAAAGAACAAGACCGTTTCCTTCCGATCGCAAACGTGAGCCGAATCATGAAAAAGTCCCTTCCGGCGAACGCCAAAATCTCGAAAGAAGCCAAGGAAACCGTGCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGGGAAAAACGGAAGACCATCAACGGCGACGATCTGCTCTGGGCCATGACCACTCTCGGATTCGAAAATTACGTCGGCCCTCTCAAGATTTACCTCAACAAATACAGAGAAACAGAGGAGGAGAAACATTCTTTGGCCAGACAGGACGACCCCTCCCCGTCTCCGGCGAAATCCACGGCGGCGATCGCTTCCGCCGCCGCCGCCGCCTCCGAACAGATCATCGGTGGGAAATCGGCCAATTCCGTGATGGATTTTCAGAATTTCAATTCTGGGTTTTATTCGCACAATCACAATAATCATCATCAGGGAAATCAAAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGAGCTTCAATGTGAGTGGAGTCCATGAAAATGGAGAAGGAAATCGAGCTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTAA | 708 | 53.11 | MSGHKRNPTTTTAAGSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSPSPAKSTAAIASAAAAASEQIIGGKSANSVMDFQNFNSGFYSHNHNNHHQGNQKSFNIIDGVGFGESLRSFNVSGVHENGEGNRARAMAAHLQQSSGW | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 38716326 | 38717033 | + | Lag0019111.1 | Lac5g2027 | 608669 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g2027 | 235 | Gene3D | Histone, subunit A | 24 | 159 | IPR009072 | GO:0046982(InterPro) | |
| Lac5g2027 | 235 | FunFam | Nuclear transcription factor Y subunit B-3 | 26 | 150 | - | - | |
| Lac5g2027 | 235 | SUPERFAMILY | Histone-fold | 34 | 139 | IPR009072 | GO:0046982(InterPro) | |
| Lac5g2027 | 235 | Coils | Coil | 113 | 133 | - | - | |
| Lac5g2027 | 235 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 68 | 84 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac5g2027 | 235 | PRINTS | CCAAT-binding transcription factor subunit A signature | 65 | 83 | - | - | |
| Lac5g2027 | 235 | PRINTS | CCAAT-binding transcription factor subunit A signature | 103 | 121 | - | - | |
| Lac5g2027 | 235 | PRINTS | CCAAT-binding transcription factor subunit A signature | 84 | 102 | - | - | |
| Lac5g2027 | 235 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Lac5g2027 | 235 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 25 | 175 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) | |
| Lac5g2027 | 235 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 37 | 101 | IPR003958 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac5g2027 | Lac-Chr5:38716326 | Lac9g1948 | Lac-Chr9:39267621 | 2.50E-47 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23864 | PF00808 | CBFD_NFYB_HMF | 7.30E-27 | CL0012 | Lac | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac5g2027 | K08065 | - | csv:101214273 | 380.563 |