Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2043 ATGGCGTATATGTGCGCAGACAGTGGCAATCTTATGGCAATTGCCCAACAAGTCATCAACCAAAAGCAACAGCAGGAGCAACAGCAACAGCAGCGCCATCAACACCACCACCACCTTTCTCCTCTTACTCCCTTCTCGCTTCTTCCTTGGCCTAACACCAATCCTTCTCCATCAATGGCTTCTTCTTCTTCTCCTAATTTGTCCTTCGGGATCTCTGCTTCTGCCTTTTCCGACCCCTTTCAGGTCGCCGGCCCGCCCGATTCTGCCGACCCGGCTTTCCATTTTCCCAATTTGGAGCATCCGTCCGCTGCGTTTAGGTTTTTTCCTAACTTTGGCGGCGGCGGCTGTGGCGGAGAGTTCGACTCCGATGAGTGGATGGATAGTTTGGTCGGCGGTGGAGATTCGACGGATAGCTCAAATCTGCCGTCTGGTTGTGATGCGTATGGCGAGTTTGGTATTTATGGTGCGGATCCCTTTACTGGCTCTCCGAGTCGACTCAGTGTCGCTTGCTCTCCGCCGGCTGAGTTCAACCGAGTTGTGCTTGCGGAAAGTTCGTATAAGACGAATAGCGTTCCGCCGCCGGCGTGGAATTCGCCTCCACCGCCGTCGTCTCCACCACCGGTCAAGGATGCGAGAGTAGGCAAGCCAGCGGCGGAGAAGATGCAGAAGAACGACGTTGTTGAAGCTTCGTCGAGTGCGCCAGAAACCGAGTTGTCGTCGCCGCCGTTGCCGCCGCTTCTGAAAGTGTTGCTTGATTGTGCGCGGCTCTGCGATTCCGAGCCCGACAGAGCTGCGAAAACTCTCGATCGGATCGGTAAATCGTTGCGAGAACATGGAGATCCGATTGAGCGAGCGGCGTTTTACTTTGGCGAGGCTCTTCGGTACAGATTATCCGCGACGGCGAGGGATAATTTCATGGATTATTCAACGGAGAGCGACGCTAATTCCGAAGATTTCTTGCTGTCTTACAAAGCTCTGAACGACGCTTGTCCTTACTCCAAGTTCGCGCATCTCACAGCGAACCAAGCAATTCTTGAAGCTACACAGAGAGCCAGTAAAATTCACATTGTCGACTTCGGAATCGTTCAGGGCGTTCAATGGGCGGCGCTACTGCAGGCTTTGGCCACACGAGCCACCGGAAAGCCTACCAGAGTTCGTATATCCGGAATACCCGCGCCGTCTCTCGGAGATTCACCGGCGGCGTCGCTGTACGCTACTGGCAATCGACTCTCCGAATTCGCAAAGCTTCTGGAACTGAATTTCGAGTTCGAACCGATTCTAACGCCGATCGAGGACCTCAACAAATCGAGCTTCAGCATTCAATCGGACGAGGTACTGGCCGTGAATTTCATGCTTCAATTGTACAATCTCCTCGACGAGGTTCCAGTTGGAGTTCATAATGCTCTCCGATTAGCGAAATCGCTAAGCCCTAAAATAGTAACTCTCGGCGAGTACGAGGCGAGTTTGAACCGGATCGGATTCTACAATCGCTTCAAGAACGCATTGAAATACTATTCCGCCGTTTTCGAATCGCTAGAGCCAAACCTGCCTCGAGACTCGCCGGAAAGACTCCAGTTAGAGAAACTGCTGCTCGGCCGTCGAATCGCAGGCGTGGTTGGAAGCAAAAGAAGAGTACGCATGGAAGACAAAGAACAGTGGAAGAATTTGATGGAAAGCTCCGGATTCGAAGCCGTAGCGCTCAGCCATTACGCCATTAGTCAGGCGAATATACTTCTATGGAACTACAATTACAGTTCCCTCTACTCTCTGATCGAATCGGCGCCGGAGTTTCTGTCTCTGGCATGGAATGACGTTCCTCTCTTAACTGTATCTTCCTGGCGTTGA 1845 52.41 MAYMCADSGNLMAIAQQVINQKQQQEQQQQQRHQHHHHLSPLTPFSLLPWPNTNPSPSMASSSSPNLSFGISASAFSDPFQVAGPPDSADPAFHFPNLEHPSAAFRFFPNFGGGGCGGEFDSDEWMDSLVGGGDSTDSSNLPSGCDAYGEFGIYGADPFTGSPSRLSVACSPPAEFNRVVLAESSYKTNSVPPPAWNSPPPPSSPPPVKDARVGKPAAEKMQKNDVVEASSSAPETELSSPPLPPLLKVLLDCARLCDSEPDRAAKTLDRIGKSLREHGDPIERAAFYFGEALRYRLSATARDNFMDYSTESDANSEDFLLSYKALNDACPYSKFAHLTANQAILEATQRASKIHIVDFGIVQGVQWAALLQALATRATGKPTRVRISGIPAPSLGDSPAASLYATGNRLSEFAKLLELNFEFEPILTPIEDLNKSSFSIQSDEVLAVNFMLQLYNLLDEVPVGVHNALRLAKSLSPKIVTLGEYEASLNRIGFYNRFKNALKYYSAVFESLEPNLPRDSPERLQLEKLLLGRRIAGVVGSKRRVRMEDKEQWKNLMESSGFEAVALSHYAISQANILLWNYNYSSLYSLIESAPEFLSLAWNDVPLLTVSSWR 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38892517 38894361 - Lag0019127.1 Lac5g2043 608685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2043 614 MobiDBLite consensus disorder prediction 187 241 - -
Lac5g2043 614 MobiDBLite consensus disorder prediction 20 63 - -
Lac5g2043 614 Coils Coil 12 32 - -
Lac5g2043 614 MobiDBLite consensus disorder prediction 46 63 - -
Lac5g2043 614 Pfam GRAS domain family 247 614 IPR005202 -
Lac5g2043 614 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 230 613 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lac5g2043 614 MobiDBLite consensus disorder prediction 193 209 - -
Lac5g2043 614 ProSiteProfiles GRAS family profile. 237 614 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2904 Lac-Chr1:49926542 Lac5g2043 Lac-Chr5:38892517 5.20E-201 dispersed
Lac5g2043 Lac-Chr5:38892517 Lac8g2990 Lac-Chr8:46753538 3.10E-52 dispersed
Lac5g2043 Lac-Chr5:38892517 Lac5g2049 Lac-Chr5:38957428 2.30E-23 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23865 PF03514 GRAS 2.40E-106 CL0063 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2043 - - - 0.0