Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2049 ATGAGAGTTCCTGTTTCCAATCACCAATCCTCCATACCCTCTTCTTCTCCAATTCAAAAGCTCAACTCTTCAGCTCCCTCCACCATCCCCACCTTCCACACTCCTTCCACAACCTCCGCCCCACCCTCCACCGCCAATATACCCTCTGCCTGTTACGAACCCACCTCCGTCCTCGACCTCCGTCGCAGCCCCGACCACCCCGCCCCCTCTACTGCCCTCCTCTCCTCCGACGATCATCGCCCCTCCAACCACCCTCCTCTCGACTGGGATGAACAAGCCCTCCACAACCTCGATTGGGACTCCATCATGGGCGATTTGGGCCTTCACGACGACTCCAACTCTGCTCTCAAAAACCCAAACCCCACCAATCCCAACAACAATCCCGATTTCCACCCTTTCGATCAAACCCACCTCGTTTCCCCTGATTTCCTCCTCTCCGAACCCTACTCCACCCACACCTTTAATTCCACCTTTGATTTCACCGCCAATTCCACCAACCTCCCCTTCGAATTCCTCGAAGACATCGTCCGCGCCGCCGATTGCTTCGACTCCAACGATTTCCAACTCGCCCACGTGATATTGGAGCGGCTCAATCAACGCCTTCAATCCCCCTCTGGAAAGCCCCTTCAGCGTGCCGCCTTCTTCTTCAAGGAAGCTCTTCAGTCCCTCATCTCCGCCTCCAACCGCTCCAATCGCCTCTCCTCCTGGCCTGAAATCGTCCATACCATCAGGGCTTACAAGGCCTTCTCTGCAATCTCCCCGATTCCCATGTTCTCCCACTTTACTACCAACCAGGCCCTTCTTGAAGCTCTCAACGGTTCCTCTTTCATTCATATTGTCGATTTCGATATTGGGTTCGGTGGCCAATACGCCTCTTTCATGAAGGAGATTGCGGAGAAGGCAGAGTCCAGGAAGATGGTTCCGCCGGTGCTTCGAATTACGGCCGTCGTGCCAGAGGAATTCGCGATCGAGAGTAGGCTGATCAGGGAGAATCTCTGCCAGTTCGCTCAAGATCTCAAGATTCGGTTTCATATAGATCTCGTGCCGCTTCGGACGTTCGAGACGTTGTCGTTCAAATCGGTGAAGTTTATGGAAGGGGAGAAGGCGACGATTCTATTGACGCCGACCATTTTCCGCCGTCTCGGGAGTATCAACAGCATCGGCTCTTTTCTCGCCGACGTGCGGCGGGTGTCGCCCTGCGTCGTCGTGTTCGTCGACGGAGAAGGCTGGTCGGACTCCGGCGCGGCGTCGTTCAAGAGGAATTTGGTGGATAGCCTGGAGTTTTACGCCTTGATGCTGGAGTCGCTGGACGCGGCGGTGGCCGGCGAGGAGTGGGTGCGGAGGATCGAGACGTTCGTGCTACGACCAAAGATATTGGCGGCAGTGGAAGGGGCGGGGAGAATGGCGGCGCCGCCGTGGAGGGAGGTGTTCCACGGTGCCGGGATGAGGCCGGTGGCGCTAAGCCAGTTTGCAGATTTTCAGGCGGAGTGCTTACTTGGCAAAGTACAGGTTCGAGGATTCCAAGTAGGCAAACGACATGCTGAGTTGGTGCTGTGCTGGCACAATAGGCCTCTGGTTGCCACGTCGGCATGGAGGTGTTAG 1602 56.37 MRVPVSNHQSSIPSSSPIQKLNSSAPSTIPTFHTPSTTSAPPSTANIPSACYEPTSVLDLRRSPDHPAPSTALLSSDDHRPSNHPPLDWDEQALHNLDWDSIMGDLGLHDDSNSALKNPNPTNPNNNPDFHPFDQTHLVSPDFLLSEPYSTHTFNSTFDFTANSTNLPFEFLEDIVRAADCFDSNDFQLAHVILERLNQRLQSPSGKPLQRAAFFFKEALQSLISASNRSNRLSSWPEIVHTIRAYKAFSAISPIPMFSHFTTNQALLEALNGSSFIHIVDFDIGFGGQYASFMKEIAEKAESRKMVPPVLRITAVVPEEFAIESRLIRENLCQFAQDLKIRFHIDLVPLRTFETLSFKSVKFMEGEKATILLTPTIFRRLGSINSIGSFLADVRRVSPCVVVFVDGEGWSDSGAASFKRNLVDSLEFYALMLESLDAAVAGEEWVRRIETFVLRPKILAAVEGAGRMAAPPWREVFHGAGMRPVALSQFADFQAECLLGKVQVRGFQVGKRHAELVLCWHNRPLVATSAWRC 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38957428 38959029 - Lag0019133.1 Lac5g2049 608691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2049 533 ProSiteProfiles GRAS family profile. 162 532 IPR005202 -
Lac5g2049 533 MobiDBLite consensus disorder prediction 113 132 - -
Lac5g2049 533 MobiDBLite consensus disorder prediction 110 132 - -
Lac5g2049 533 Pfam GRAS domain family 173 532 IPR005202 -
Lac5g2049 533 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 165 531 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lac5g2049 533 MobiDBLite consensus disorder prediction 1 89 - -
Lac5g2049 533 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2049 Lac-Chr5:38957428 Lac8g1624 Lac-Chr8:34235615 6.60E-27 dispersed
Lac5g2043 Lac-Chr5:38892517 Lac5g2049 Lac-Chr5:38957428 2.30E-23 proximal
Lac11g0059 Lac-Chr11:503056 Lac5g2049 Lac-Chr5:38957428 3.30E-14 transposed
Lac12g1443 Lac-Chr12:25636938 Lac5g2049 Lac-Chr5:38957428 6.00E-58 transposed
Lac5g0412 Lac-Chr5:4372862 Lac5g2049 Lac-Chr5:38957428 9.90E-64 transposed
Lac1g2904 Lac-Chr1:49926542 Lac5g2049 Lac-Chr5:38957428 2.10E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23866 PF03514 GRAS 1.10E-89 CL0063 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2049 K27747 - csv:116401665 763.066