Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g2055 | ATGCCAGCAGACTTAGAAAACTCCTCCACCGCTTCCGGCGAAGCCAGTATCTCCTCCACCGGCAATCAGCCTCCGCCGCCCAAATCCGCCGTCAAGAAGAAGCGTAATTTACCCGGAATGCCAGATCCGGATGCAGAGGTAATTGCTCTGTCTCCGGAGACCCTCCTGGCCACAAATCGATTCGTTTGTGAAATTTGCAACAAAGGATTTCAAAGAGATCAGAATCTGCAACTTCACCGGCGAGGTCACAATCTTCCATGGAAGCTCCGGCAACGGACGAGCAAAGAGGTGAGAAAGAAGGTCTACGTTTGCCCGGAGCCGTCGTGCGTCCACCACCATCCGTCGAGAGCGCTCGGCGATCTGACCGGAATAAAGAAGCACTTCTGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCTAAGAAATACGCCGTGAAGTCCGATTGGAAGGCCCATTCAAAGATTTGTGGCACCAGAGAGTACAAATGTGACTGCGAGACTGTGTTTTCGAGAAGAGACAGTTTCATTACTCACAGAGCCTTTTGTGATGTGTTGACGAAGGAGGCCGCCGGAGGTCTGTCTCCGCCAGCGGCGGCGGCGGCGGAGAATATGAATTTGGAGTCCGATCCACAAGCTCAGCCGCCGGATAGTTCGTCTCCGCCGCCTACTGCTCCACCTCCTTCCGCCGCCGCCCCAATAGCCCCGCCTCCATCAACTGACGCGATATCATCAATCTCGTCTATTCAGAACAAAGGTAAATATAATTAG | 777 | 53.8 | MPADLENSSTASGEASISSTGNQPPPPKSAVKKKRNLPGMPDPDAEVIALSPETLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVKSDWKAHSKICGTREYKCDCETVFSRRDSFITHRAFCDVLTKEAAGGLSPPAAAAAENMNLESDPQAQPPDSSSPPPTAPPPSAAAPIAPPPSTDAISSISSIQNKGKYN | 258 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 39018502 | 39019456 | - | Lag0019139.1 | Lac5g2055 | 608697 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g2055 | 258 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 98 | 132 | - | - | |
Lac5g2055 | 258 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Lac5g2055 | 258 | FunFam | protein indeterminate-domain 12-like | 40 | 108 | - | - | |
Lac5g2055 | 258 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 63 | 83 | IPR013087 | - | |
Lac5g2055 | 258 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 115 | 194 | - | - | |
Lac5g2055 | 258 | Gene3D | Classic Zinc Finger | 115 | 193 | - | - | |
Lac5g2055 | 258 | Pfam | Zinc-finger of C2H2 type | 61 | 83 | IPR013087 | - | |
Lac5g2055 | 258 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Lac5g2055 | 258 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 61 | 83 | IPR013087 | - | |
Lac5g2055 | 258 | SMART | c2h2final6 | 61 | 83 | IPR013087 | - | |
Lac5g2055 | 258 | SMART | c2h2final6 | 137 | 157 | IPR013087 | - | |
Lac5g2055 | 258 | SUPERFAMILY | beta-beta-alpha zinc fingers | 60 | 157 | IPR036236 | - | |
Lac5g2055 | 258 | Gene3D | Classic Zinc Finger | 41 | 108 | - | - | |
Lac5g2055 | 258 | MobiDBLite | consensus disorder prediction | 242 | 258 | - | - | |
Lac5g2055 | 258 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 163 | 193 | - | - | |
Lac5g2055 | 258 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 136 | 160 | - | - | |
Lac5g2055 | 258 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 18 | 229 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Lac5g2055 | 258 | MobiDBLite | consensus disorder prediction | 201 | 258 | - | - | |
Lac5g2055 | 258 | MobiDBLite | consensus disorder prediction | 217 | 237 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac5g2055 | Lac-Chr5:39018502 | Lac9g2004 | Lac-Chr9:39675566 | 7.50E-85 | dispersed | |
Lac5g2055 | Lac-Chr5:39018502 | Lac2g0223 | Lac-Chr2:1709421 | 8.60E-89 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23867 | PF12171 | zf-C2H2_jaz | 6.60E-05 | CL0361 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac5g2055 | K25869 | - | csv:101215476 | 379.793 |