Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2055 ATGCCAGCAGACTTAGAAAACTCCTCCACCGCTTCCGGCGAAGCCAGTATCTCCTCCACCGGCAATCAGCCTCCGCCGCCCAAATCCGCCGTCAAGAAGAAGCGTAATTTACCCGGAATGCCAGATCCGGATGCAGAGGTAATTGCTCTGTCTCCGGAGACCCTCCTGGCCACAAATCGATTCGTTTGTGAAATTTGCAACAAAGGATTTCAAAGAGATCAGAATCTGCAACTTCACCGGCGAGGTCACAATCTTCCATGGAAGCTCCGGCAACGGACGAGCAAAGAGGTGAGAAAGAAGGTCTACGTTTGCCCGGAGCCGTCGTGCGTCCACCACCATCCGTCGAGAGCGCTCGGCGATCTGACCGGAATAAAGAAGCACTTCTGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCTAAGAAATACGCCGTGAAGTCCGATTGGAAGGCCCATTCAAAGATTTGTGGCACCAGAGAGTACAAATGTGACTGCGAGACTGTGTTTTCGAGAAGAGACAGTTTCATTACTCACAGAGCCTTTTGTGATGTGTTGACGAAGGAGGCCGCCGGAGGTCTGTCTCCGCCAGCGGCGGCGGCGGCGGAGAATATGAATTTGGAGTCCGATCCACAAGCTCAGCCGCCGGATAGTTCGTCTCCGCCGCCTACTGCTCCACCTCCTTCCGCCGCCGCCCCAATAGCCCCGCCTCCATCAACTGACGCGATATCATCAATCTCGTCTATTCAGAACAAAGGTAAATATAATTAG 777 53.8 MPADLENSSTASGEASISSTGNQPPPPKSAVKKKRNLPGMPDPDAEVIALSPETLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVKSDWKAHSKICGTREYKCDCETVFSRRDSFITHRAFCDVLTKEAAGGLSPPAAAAAENMNLESDPQAQPPDSSSPPPTAPPPSAAAPIAPPPSTDAISSISSIQNKGKYN 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39018502 39019456 - Lag0019139.1 Lac5g2055 608697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2055 258 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Lac5g2055 258 MobiDBLite consensus disorder prediction 1 26 - -
Lac5g2055 258 FunFam protein indeterminate-domain 12-like 40 108 - -
Lac5g2055 258 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lac5g2055 258 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Lac5g2055 258 Gene3D Classic Zinc Finger 115 193 - -
Lac5g2055 258 Pfam Zinc-finger of C2H2 type 61 83 IPR013087 -
Lac5g2055 258 MobiDBLite consensus disorder prediction 1 44 - -
Lac5g2055 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Lac5g2055 258 SMART c2h2final6 61 83 IPR013087 -
Lac5g2055 258 SMART c2h2final6 137 157 IPR013087 -
Lac5g2055 258 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Lac5g2055 258 Gene3D Classic Zinc Finger 41 108 - -
Lac5g2055 258 MobiDBLite consensus disorder prediction 242 258 - -
Lac5g2055 258 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 163 193 - -
Lac5g2055 258 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
Lac5g2055 258 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 229 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac5g2055 258 MobiDBLite consensus disorder prediction 201 258 - -
Lac5g2055 258 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2055 Lac-Chr5:39018502 Lac9g2004 Lac-Chr9:39675566 7.50E-85 dispersed
Lac5g2055 Lac-Chr5:39018502 Lac2g0223 Lac-Chr2:1709421 8.60E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23867 PF12171 zf-C2H2_jaz 6.60E-05 CL0361 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2055 K25869 - csv:101215476 379.793